PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026896m
Common NameEUTSA_v10026896mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 310aa    MW: 35636.5 Da    PI: 10.4883
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026896mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.4e-161054347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT eEd ll+++v+ +G g+W+++ar  g++R +k+c++rw + 
  Thhalv10026896m 10 AWTGEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNN 54
                     6*****************************************986 PP
2Myb_DNA-binding48.91.5e-1561105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ ++++++ ++G++ W+tIar ++ gRt++++k++w+++
  Thhalv10026896m  61 RGQITPHEESIILQLHVKWGNR-WSTIARSLP-GRTENEIKNYWRTH 105
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.095155IPR017930Myb domain
SuperFamilySSF466891.87E-277102IPR009057Homeodomain-like
SMARTSM007172.5E-13757IPR001005SANT/Myb domain
CDDcd001673.47E-111055No hitNo description
PfamPF002495.7E-141055IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-221062IPR009057Homeodomain-like
PROSITE profilePS5129422.67556110IPR017930Myb domain
SMARTSM007176.3E-1460108IPR001005SANT/Myb domain
PfamPF002498.2E-1361105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2263109IPR009057Homeodomain-like
CDDcd001674.29E-1065106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKKFGEKVHA WTGEEDRLLI EYVRVHGEGR WNSVARLAGL KRNGKSCRLR WVNNLRPDLN  60
RGQITPHEES IILQLHVKWG NRWSTIARSL PGRTENEIKN YWRTHFKKKA KPATNNAEKT  120
GGMMPRLTLD PEFQQRNKQQ NYYGSKKKGK NNAEKTKSLL LKRQQFKQQR QMELQQERQL  180
FQFDQHDMKK IMSILEDNSS SSSSDGGDVF YTPHLMIYSS TTNGYNNPNP LEEQLQGKFA  240
PVNIPVTTTM NQNNVIGDGF GNLDVVDGHG EKLVISGLWS EASKKIVLHF PERLVEPRRC  300
SHTPTVLAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-221111030128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026896m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1337051e-122AY133705.1 Arabidopsis thaliana clone C103160 putative myb protein (At4g13480) mRNA, complete cds.
GenBankAY5196061e-122AY519606.1 Arabidopsis thaliana MYB transcription factor (At4g13480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004947.11e-155LOW QUALITY PROTEIN: trichome differentiation protein GL1
TrEMBLV4MI930.0V4MI93_EUTSA; Uncharacterized protein
STRINGXP_006414896.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.14e-94myb domain protein 79