PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026824m
Common NameEUTSA_v10026824mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 425aa    MW: 49446.7 Da    PI: 6.8749
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026824mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.5e-19214260148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +lv++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
  Thhalv10026824m 214 KGQWTAEEDRILVQLVEKYGLRKWSHIAQVLP-GRIGKQCRERWHNHL 260
                      799*****************************.*************97 PP
2Myb_DNA-binding54.23.2e-17266308145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +  W++eEd+ l+d +k+ G++ W+ Ia++++ gRt++++k++w+
  Thhalv10026824m 266 KETWSEEEDKVLIDFHKEIGNK-WAEIAKRLP-GRTENSIKNHWN 308
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-26208263IPR009057Homeodomain-like
PROSITE profilePS5129430.456209264IPR017930Myb domain
SuperFamilySSF466891.87E-32212307IPR009057Homeodomain-like
SMARTSM007176.2E-18213262IPR001005SANT/Myb domain
PfamPF139211.9E-20217275No hitNo description
CDDcd001672.50E-16217260No hitNo description
Gene3DG3DSA:1.10.10.603.7E-22264313IPR009057Homeodomain-like
PROSITE profilePS5129420.273265315IPR017930Myb domain
SMARTSM007177.1E-16265313IPR001005SANT/Myb domain
CDDcd001672.50E-12268311No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MENFVDESSF VPLNQTIFTR DQELMKEEDF PFEVVDQSKP TSFLQDFHHL DHEHQFDHHH  60
HGSASSNPLI GIQTMSSCIN NAPFEHCSYQ GNVVDFYESK PHLMNHHFQA AENPYFTRNH  120
HHHEEIHSVD EHDPMDLEQN NMMMMRMIPF DYPPTEIIKP MNFVMPDEVS CVSADNDCYK  180
ALSFNKNKPF LSRKLSSSSS SSSWKGKKKS TLVKGQWTAE EDRILVQLVE KYGLRKWSHI  240
AQVLPGRIGK QCRERWHNHL RPDIKKETWS EEEDKVLIDF HKEIGNKWAE IAKRLPGRTE  300
NSIKNHWNAT KRRQFSKRKC RSKYPRPSLL QDYIKSLDLG ALSASSVPAR GRRKESNKKK  360
DVVAVEEKKK KKEDEIYGRD RIVPECVFTD DFGFNEKLLE EGCSIDSLLD DLPQPDIDAF  420
VHGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-442123152105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357371KKKDVVAVEEKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026824m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1760030.0AF176003.2 Arabidopsis thaliana putative transcription factor (MYB98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414060.10.0transcription factor MYB98
SwissprotQ9S7L20.0MYB98_ARATH; Transcription factor MYB98
TrEMBLV4MQV40.0V4MQV4_EUTSA; Uncharacterized protein
STRINGXP_006414060.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.10.0myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]