PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026818m
Common NameEUTSA_v10026818mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 359aa    MW: 40874.4 Da    PI: 10.0287
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026818mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.7e-1724971394
                     TT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3 13 sgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                     ++ +++p  f+++h +g k+  kt +l++  s  +Wevkl  ++++    lt+GWk+F  a++L+ gD+vvFk++g++ f  +v
  Thhalv10026818m 24 TN-FTIPVAFFSKHiEG-KNDLKTAKLRSdASEITWEVKL--DGRR----LTGGWKDFTTAHDLRIGDIVVFKHEGDMVF--NV 97
                     44.9**********743.456789999987888*******..9998....************************999988..54 PP
2B370.32.6e-22129223398
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       +++++++ ks+ l+lp + ++++ ++  ++ ++++ +e+g+sW++ l++r ++ +y++++GW +F+++n+ k+gD+++F l+g+ + ++++ +
  Thhalv10026818m 129 VAEVTASNIKSDKLRLPMEATSSNALNRGCH-KMIVVNEEGKSWTLSLRFRESDTSYYIGGGWTRFCRENKRKAGDSILFNLVGDGRSTPMICI 221
                      5678999*****************9998776.9999*************************************************9999****9 PP

                      E- CS
               B3  97 fr 98 
                      + 
  Thhalv10026818m 222 CP 223
                      97 PP
3B342.31.3e-13257354199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT-.-TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangL.kegDfvvFkldgrsefel 92 
                      f+++ +++++++++ l+lp +f++ +g++k+e  +++l+d++g +   kl+    + gr  l+kGWk+F+kan++ k g  + ++l++ +++ +
  Thhalv10026818m 257 FVTIILTHYNMRHSKLILPINFVKINGINKHE--EIILKDKHGVKRLTKLTKdGPNYGRRGLGKGWKDFCKANDVfKIGQPFKLELIW-EDTIP 347
                      788899*****************888988655..8***************88744445567*************846**********9.77779 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      v+k+++k
  Thhalv10026818m 348 VLKFCSK 354
                      9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-228105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-198105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.57511103IPR003340B3 DNA binding domain
CDDcd100175.54E-1512100No hitNo description
SMARTSM010193.3E-2314103IPR003340B3 DNA binding domain
PfamPF023622.2E-112595IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-19126218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-18126224IPR015300DNA-binding pseudobarrel domain
CDDcd100173.98E-20127223No hitNo description
PROSITE profilePS5086314.395127225IPR003340B3 DNA binding domain
SMARTSM010193.2E-23128225IPR003340B3 DNA binding domain
PfamPF023622.0E-21129223IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-18249354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-18251353IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-14256353No hitNo description
PfamPF023622.3E-13257354IPR003340B3 DNA binding domain
SMARTSM010191.2E-23257355IPR003340B3 DNA binding domain
PROSITE profilePS508639.446257354IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MANPPLQSPT NPHFFQPLLP GFDTNFTIPV AFFSKHIEGK NDLKTAKLRS DASEITWEVK  60
LDGRRLTGGW KDFTTAHDLR IGDIVVFKHE GDMVFNVTPF GPSCCEIQKK TLKPKTEPKS  120
SLSFDYCFVA EVTASNIKSD KLRLPMEATS SNALNRGCHK MIVVNEEGKS WTLSLRFRES  180
DTSYYIGGGW TRFCRENKRK AGDSILFNLV GDGRSTPMIC ICPEEECSEL MSKYMGKKKI  240
KRRPIWVASS SSRQNRFVTI ILTHYNMRHS KLILPINFVK INGINKHEEI ILKDKHGVKR  300
LTKLTKDGPN YGRRGLGKGW KDFCKANDVF KIGQPFKLEL IWEDTIPVLK FCSKIESIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026818m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004600.10.0B3 domain-containing protein REM7
TrEMBLV4MC960.0V4MC96_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006412566.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.13e-89B3 family protein