PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10026815m | ||||||||
Common Name | EUTSA_v10026815mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | Dof | ||||||||
Protein Properties | Length: 253aa MW: 28521.6 Da PI: 8.9945 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.3 | 1.3e-36 | 22 | 77 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + cprC+s+ntkfCyynnyslsqPry Ck+CrryWt+GGalrn+P+Gg+ rk k++ Thhalv10026815m 22 RVCPRCNSDNTKFCYYNNYSLSQPRYICKNCRRYWTHGGALRNIPIGGSGRKTKRQ 77 68**************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-23 | 16 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.118 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.5E-32 | 23 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDNSNVFVRG ANQVNEEKPL PRVCPRCNSD NTKFCYYNNY SLSQPRYICK NCRRYWTHGG 60 ALRNIPIGGS GRKTKRQKID QPSLSQMVSV EIQQINHHQP FLHVQETNEF VGSFGGSSSV 120 VAVGNHFGSF SEIHGDMVLP IRTIRPLMDR LDFSDGSFNQ DYFDVGSNDL GNSFINQPIG 180 RHVDSYSGYR MNQEDQNKQN QSFNNTLNMN HNTSTNESRG SSGIDHMNKN NNNKVIKKCV 240 FRSSSSLEKN GP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10026815m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413832.1 | 0.0 | dof zinc finger protein DOF4.4 | ||||
Swissprot | Q9SUA9 | 6e-78 | DOF44_ARATH; Dof zinc finger protein DOF4.4 | ||||
TrEMBL | V4LX81 | 0.0 | V4LX81_EUTSA; Uncharacterized protein | ||||
STRING | XP_006413832.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1602 | 17 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21050.1 | 8e-72 | Dof-type zinc finger domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10026815m |
Entrez Gene | 18029476 |