PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026276m
Common NameEUTSA_v10026276mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 203aa    MW: 22366.1 Da    PI: 9.5455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026276mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-174190255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Thhalv10026276m 41 NFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 90
                     59****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.18E-3340100No hitNo description
PfamPF008476.6E-124090IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-214199IPR016177DNA-binding domain
PROSITE profilePS5103222.5634198IPR001471AP2/ERF domain
SMARTSM003808.3E-4041104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-314199IPR001471AP2/ERF domain
PRINTSPR003675.8E-104253IPR001471AP2/ERF domain
PRINTSPR003675.8E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MQDSSSPPLG SQRNLRSPAP ERTGKNSKSK NEQKGVSKHP NFRGVRMRQW GKWVSEIREP  60
RKKSRIWLGT FSTPEMAARA HDVAALAIKG GSAHLNFPEL AYHLPRPASA DPKDIQAAAA  120
AAAVEWKAPE SPSSTATSSM TSSPLADDAF SDLPDLLLDV NDHHKIDGFW DSFPCEEPFF  180
LENYKEIGIW KEANSGRRTI SR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-163498672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026276m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615441e-163AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankAY5608741e-163AY560874.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g16750) mRNA, complete cds.
GenBankBT0115761e-163BT011576.1 Arabidopsis thaliana At4g16750 mRNA, complete cds.
GenBankBT0205921e-163BT020592.1 Arabidopsis thaliana At4g16750 gene, complete cds.
GenBankCP0026871e-163CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973411e-163Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414307.11e-148ethylene-responsive transcription factor ERF039
SwissprotQ9SUK81e-100ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLV4LYJ81e-146V4LYJ8_EUTSA; Uncharacterized protein
STRINGXP_006414307.11e-147(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.12e-96ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]