PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10026086m

Common Name

EUTSA_v10026086mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

LBD

Protein Properties

Length: 247aa MW: 27063.8 Da PI: 7.6456

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10026086m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.3	3.3e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C++ C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q Thhalv10026086m 2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISAVPELNRPALFQSLLFEACGRTVNPVNGAVGMLWTGNWHVCQ 95 6*******************9999777889********************************************************** PP DUF260 90 lkaelall 97 +++e++l+ Thhalv10026086m 96 AAVETVLR 103 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.297	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISAVPELNR 60 PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET VLRGGTLRPM SDLLESPSLI 120 SSDDSSEMIC TDIRRDVSRN NQNHHCRFSS SRSKLNTTEI EPVDRKRVKT DRYGSDLDLQ 180 LNHGLALTFP AIPVPFIPPL PFSKAGNGDG PGSPSEESVT TSCWENGLNG DTYRNKRETK 240 LLNLFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10026086m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473874	1e-142	AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBank	AY072144	1e-142	AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBank	AY122976	1e-142	AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411876.1	0.0	LOB domain-containing protein 39
Swissprot	Q9SZE8	1e-133	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	V4MAC0	0.0	V4MAC0_EUTSA; Uncharacterized protein
STRING	XP_006411876.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-114	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	Thhalv10026086m
Entrez Gene	18030473