PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10026022m | ||||||||
Common Name | EUTSA_v10026022mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29763 Da PI: 7.3067 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.4 | 3.7e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ +G +W++++ + g+ R +k+c++rw +yl Thhalv10026022m 16 KGFWSPEEDEKLRSYILSHGHSCWTAVPIKAGLQRNGKSCRLRWINYL 63 688*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.4e-15 | 73 | 114 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T+eE+e+++ + lG++ W++Ia++++ gRt++++k++w+++l Thhalv10026022m 73 TAEEEEIILTFHSSLGSK-WSRIAKYLP-GRTDNEIKNYWHSHL 114 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.012 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.43E-27 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-10 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-12 | 17 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.16E-8 | 19 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-21 | 19 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.533 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 9.2E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.52E-10 | 73 | 114 | No hit | No description |
Pfam | PF00249 | 2.4E-13 | 73 | 114 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAKMKSGERL NQRQRKGFWS PEEDEKLRSY ILSHGHSCWT AVPIKAGLQR NGKSCRLRWI 60 NYLKPGLKRE MITAEEEEII LTFHSSLGSK WSRIAKYLPG RTDNEIKNYW HSHLKKRWLK 120 SQSSQHTTSI SSSSSESPVA CGKRNPESMV SDHVISFQRL PENKSSSSSE ESNSNISYPC 180 SSGLEIPRLF FSEWFPSSDP HIDYSSDLTD SKHSQAPNNE RSVSDYEEVD DGDQFHYNEM 240 LMNDSNWTLN DVVFGSKCQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-23 | 16 | 117 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10026022m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519609 | 0.0 | AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413295.1 | 0.0 | transcription factor LAF1 | ||||
Swissprot | Q9M0K4 | 1e-140 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | V4MP29 | 0.0 | V4MP29_EUTSA; Uncharacterized protein | ||||
STRING | XP_006413295.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 1e-129 | myb domain protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10026022m |
Entrez Gene | 18029913 |
Publications ? help Back to Top | |||
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