PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025977m
Common NameEUTSA_v10025977mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 270aa    MW: 30463 Da    PI: 5.9471
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025977mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.14.9e-18178211134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ +
  Thhalv10025977m 178 CSHCGTNNTPQWRTGPLGPKTLCNACGVRFKSGR 211
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-836268IPR016679Transcription factor, GATA, plant
SMARTSM004012.3E-15172222IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15175235No hitNo description
PROSITE profilePS5011411.912176208IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-14176209IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.47E-15177234No hitNo description
PROSITE patternPS003440178203IPR000679Zinc finger, GATA-type
PfamPF003201.0E-15178212IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEMWTEARAL KASLRGEAIK HQVLMSEELS RTSSAEDFSV ECFLDFSEGQ EEEPEEELVS  60
VSSSQEEHEQ EQDCIFSSQP SVFDQLPSLP DEDVEELEWV SRVVDDCSSP EVSLLFTQTH  120
KTKPSFTSRI PVKPRTKRSR NSLTGGRVWP LVSTNQHAAT ERWRKKKQET AVAFQRRCSH  180
CGTNNTPQWR TGPLGPKTLC NACGVRFKSG RLCPEYRPAD SPTFSNEIHS NLHRKVLELR  240
KSKELGEETG EATTKSDQVK FGSKVVEKT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025977m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527710.0AK352771.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-P20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005886.10.0GATA transcription factor 3
SwissprotQ8L4M61e-153GATA3_ARATH; GATA transcription factor 3
TrEMBLE4MW740.0E4MW74_EUTHA; GATA transcription factor
TrEMBLV4LSS90.0V4LSS9_EUTSA; GATA transcription factor
STRINGXP_006412197.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-151GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]