PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025958m
Common NameEUTSA_v10025958mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 276aa    MW: 31034.6 Da    PI: 4.685
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025958mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.11.7e-2194144256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Thhalv10025958m  94 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAYDQAAYKLRGE 144
                      59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.24E-3593152No hitNo description
SMARTSM003804.4E-3994157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-3394152IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2394152IPR016177DNA-binding domain
PROSITE profilePS5103223.32794151IPR001471AP2/ERF domain
PRINTSPR003671.9E-1195106IPR001471AP2/ERF domain
PfamPF008474.4E-1595144IPR001471AP2/ERF domain
PRINTSPR003671.9E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAAIDTFNSS TDLSDPFKEE LMEVLKPFTN TVSSLAPISN TIFGYNQTTP LGLNQLTPYQ  60
IHQIQNQLNQ RRNSNISNLS PKPVPMKNMA TQKLYRGVRQ RHWGKWVAEI RLPKNRTRLW  120
LGTFDTAEEA AMAYDQAAYK LRGELARLNF PHISHEYGYG GGDSSFKPLH PSVEAKLEAI  180
CQSLRKTEDD DLPCSETELF LPKTEYQESE FGFLRSDEKS FSDESQVGSS SPESGITTTF  240
FDFSDSGFDE IGSFGLEKFP SLEIDWDAIS KLSES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2293151160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-2290151163ATERF1
3gcc_A6e-2290151163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025958m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892600.0AC189260.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021M22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411774.10.0ethylene-responsive transcription factor ERF060
SwissprotO656651e-162ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLV4MDE30.0V4MDE3_EUTSA; Uncharacterized protein
STRINGXP_006411774.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-134ERF family protein