PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025923m
Common NameEUTSA_v10025923mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 285aa    MW: 30916 Da    PI: 8.1014
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025923mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-18126180256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tk+q   Lee F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Thhalv10025923m 126 RKKLRLTKQQSALLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 180
                      788899***********************************************98 PP
2HD-ZIP_I/II121.73.8e-39126214190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk+rl+k+q++lLEesF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en+rL+ke ++L+ +
  Thhalv10025923m 126 RKKLRLTKQQSALLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRRLQKELQDLK-A 214
                      69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.103122182IPR001356Homeobox domain
SMARTSM003896.1E-15124186IPR001356Homeobox domain
SuperFamilySSF466895.56E-18124190IPR009057Homeodomain-like
CDDcd000864.99E-16126183No hitNo description
PfamPF000461.3E-15126180IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.9E-17126180IPR009057Homeodomain-like
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
SMARTSM003405.4E-25182225IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-9182216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGLDDSCNTG LVLGLGLSPT PNNYNHVIKK SSATVDHRLD PSLTLSLSGE SYKTMTVEMT  60
VAGAGDQICR QTSSHSGISS FSSGRIKRER EICHGDDQEE AGDTTERVVC SRVSDDHEDE  120
EGVSARKKLR LTKQQSALLE ESFKLHSTLN PKQKQALARQ LNLRPRQVEV WFQNRRARTK  180
LKQTEVDCEL LKKCCETLTD ENRRLQKELQ DLKALKMPPP FYMHMPAATL TMCPSCERIG  240
GSVGAGGGGG GGTVAVDGGT AKGAFSIVTK PLFYNPFANP SAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025923m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412540.0AJ441254.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411852.10.0homeobox-leucine zipper protein HAT22
SwissprotP466041e-157HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLV4LRS00.0V4LRS0_EUTSA; Uncharacterized protein
STRINGXP_006411852.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-151HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]