PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025921m
Common NameEUTSA_v10025921mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 285aa    MW: 31749.7 Da    PI: 8.4808
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025921mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.3e-19138192256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Le+ F+ +++++ +++  LAkklgLt rqV vWFqNrRa+ k
  Thhalv10025921m 138 RKKLRLSKDQSAVLEDTFKDHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 192
                      677889***********************************************98 PP
2HD-ZIP_I/II122.32.4e-39138227191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlsk+q+++LE++F+ +++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rLeke +eLr +l
  Thhalv10025921m 138 RKKLRLSKDQSAVLEDTFKDHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELR-AL 227
                      69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.4E-26299IPR006712HD-ZIP protein, N-terminal
PROSITE profilePS5007116.989134194IPR001356Homeobox domain
SMARTSM003891.6E-17136198IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.9E-18138192IPR009057Homeodomain-like
PfamPF000462.3E-16138192IPR001356Homeobox domain
CDDcd000867.07E-16138195No hitNo description
SuperFamilySSF466893.43E-18138203IPR009057Homeodomain-like
PRINTSPR000317.5E-6165174IPR000047Helix-turn-helix motif
PROSITE patternPS000270169192IPR017970Homeobox, conserved site
PRINTSPR000317.5E-6174190IPR000047Helix-turn-helix motif
SMARTSM003401.8E-23194237IPR003106Leucine zipper, homeobox-associated
PfamPF021838.1E-8194228IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010582Biological Processfloral meristem determinacy
GO:0048467Biological Processgynoecium development
GO:0080127Biological Processfruit septum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MMMGKEDLGL SLSLGFAQNH HPLQLNLKST SSPLSNLQMF PSNQTFVSSS DNHQNQQFLR  60
KIDVNSLPST VDLEEETGVS SPNSTISSTV SGKRRSEREG TSGGAGDHDL DITLDRSSSR  120
GSGTSDEEEE EYGGEACRKK LRLSKDQSAV LEDTFKDHNT LNPKQKLALA KKLGLTARQV  180
EVWFQNRRAR TKLKQTEVDC EYLKRCVEKL TEENRRLEKE AAELRALKLS PRLYGQMSPP  240
TTLLMCPSCE RVAGPSKYNQ RSVSLSPWLQ MAHGSTFDVM RPRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186194RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00050PBMTransfer from AT4G17460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025921m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414228.10.0homeobox-leucine zipper protein HAT1
SwissprotP466000.0HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLV4P7V40.0V4P7V4_EUTSA; Uncharacterized protein
STRINGXP_006414228.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.11e-147Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]