PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025906m
Common NameEUTSA_v10025906mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 288aa    MW: 31679.3 Da    PI: 5.302
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025906mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95.2e-36161072102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d ++++++sw+e+g++fvv+++ efak++Lp+yFkh+nf+SF+RQLn+YgF+k+  ++         weF++++F++g++++l+
  Thhalv10025906m  16 FLSKTYQLVDDVSTDDVVSWNEDGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDK---------WEFANDNFRRGQEDQLT 100
                      9***************************************************************9999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+ks
  Thhalv10025906m 101 EIRRRKS 107
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.8E-38799IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-5712105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3213105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3216105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-201639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-205466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMTAVTAAQR SVPAPFLSKT YQLVDDVSTD DVVSWNEDGT AFVVWKTAEF AKDLLPQYFK  60
HNNFSSFIRQ LNTYGFRKTV PDKWEFANDN FRRGQEDQLT EIRRRKSVIA AAGKCVAVVG  120
SPSESNSAGD DHGSSSTSSP GSKNPGSVEN MVADLSGENE KLKRENNSLS SELAAAKRQR  180
DELVAFLTEN LKVEPEQIDQ MINGGKFKPI ASRISLTDEE SDCEGCGGAE EEEGVGEGLK  240
LFGVWLKGER KKRGRDEKNF VVGGSHMTEI KNVDFHAPLW KSSKVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24710521129Heat shock factor protein 1
5d5v_B2e-24710521129Heat shock factor protein 1
5d5v_D2e-24710521129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025906m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411927.10.0heat stress transcription factor B-1
SwissprotQ963201e-156HSFB1_ARATH; Heat stress transcription factor B-1
TrEMBLV4LRZ70.0V4LRZ7_EUTSA; Uncharacterized protein
STRINGXP_006411927.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-130heat shock factor 4
Publications ? help Back to Top
  1. Weng M, et al.
    Histone chaperone ASF1 is involved in gene transcription activation in response to heat stress in Arabidopsis thaliana.
    Plant Cell Environ., 2014. 37(9): p. 2128-38
    [PMID:24548003]
  2. Nagashima Y,Iwata Y,Ashida M,Mishiba K,Koizumi N
    Exogenous salicylic acid activates two signaling arms of the unfolded protein response in Arabidopsis.
    Plant Cell Physiol., 2014. 55(10): p. 1772-8
    [PMID:25138441]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]
  4. Hossain MA, et al.
    Identification of Novel Components of the Unfolded Protein Response in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 650
    [PMID:27242851]
  5. Röth S,Mirus O,Bublak D,Scharf KD,Schleiff E
    DNA-binding and repressor function are prerequisites for the turnover of the tomato heat stress transcription factor HsfB1.
    Plant J., 2017. 89(1): p. 31-44
    [PMID:27560701]
  6. Xu G, et al.
    uORF-mediated translation allows engineered plant disease resistance without fitness costs.
    Nature, 2017. 545(7655): p. 491-494
    [PMID:28514448]