PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025869m
Common NameEUTSA_v10025869mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 296aa    MW: 33536 Da    PI: 7.9131
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025869mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.5e-32214272159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+
  Thhalv10025869m 214 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHS 272
                      59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-33199272IPR003657WRKY domain
SuperFamilySSF1182903.14E-28207273IPR003657WRKY domain
PROSITE profilePS5081129.356209274IPR003657WRKY domain
SMARTSM007749.9E-37214273IPR003657WRKY domain
PfamPF031063.9E-25215271IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGAINQGISL FDEPQNIVNP HNSNHLGFFF SFPSHTLSSS SSSTSSSPSS LVSPFLGHYS  60
LNSFLHNNPS SFVTHPQDPI HPMANIPETL ISSKQRDAHD SIVNLDHHRL TGDISSQRPS  120
PNLWAWSSQA GYDYSEKNGH GSEIDVDDID DDVGDGGGID DHHHHQRHDG PRRQKHNTNL  180
LGVVSTLKMK KLKTRRKVRE PRFCFKTLSD VDVLDDGYRW RKYGQKVVKN TQHPRSYYRC  240
TQDKCRVKKR VERLADDPRM VITTYEGRHL HSPSNHLDDD SLSSSHHSPL SNFFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-26205271874Probable WRKY transcription factor 4
2lex_A4e-26205271874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025869m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411744.10.0probable WRKY transcription factor 13
SwissprotQ9SVB71e-151WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLV4MDC60.0V4MDC6_EUTSA; Uncharacterized protein
STRINGXP_006411744.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-108WRKY DNA-binding protein 13