PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025832m
Common NameEUTSA_v10025832mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 303aa    MW: 34305.7 Da    PI: 4.9718
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025832mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-1858111356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++  +q+++Le+ Fe ++++  e++++LA++lgL+ rqV vWFqNrRa++k
  Thhalv10025832m  58 KKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWK 111
                      45578899*********************************************9 PP
2HD-ZIP_I/II128.62.5e-4157149193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrl  +qvk+LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++++L +e+++
  Thhalv10025832m  57 EKKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKNQYDSLRHNFDSLRRDNDSLLQEISK 149
                      69*************************************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.41E-1849115IPR009057Homeodomain-like
PROSITE profilePS5007116.79553113IPR001356Homeobox domain
SMARTSM003891.5E-1656117IPR001356Homeobox domain
PfamPF000461.4E-1558111IPR001356Homeobox domain
CDDcd000867.08E-1658114No hitNo description
Gene3DG3DSA:1.10.10.602.8E-1961120IPR009057Homeodomain-like
PRINTSPR000317.0E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000317.0E-693109IPR000047Helix-turn-helix motif
PfamPF021832.0E-16113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKRLSSSDSM CGLLSNSTDD QSPRGYGSNF QSMLDGYEEE GTIVEEYSGN HHMGISEKKR  60
RLRVDQVKAL EKNFELENKL EPERKTKLAQ ELGLQPRQVA VWFQNRRARW KTKQLEKDYG  120
VLKNQYDSLR HNFDSLRRDN DSLLQEISKI KAKINGEEVN RATIESDISA VKEEKVSLPE  180
KLFHKTDPTP SSPPQFLEHS TGFNYRRSFT DLRDLLPNST AAVDAGSSDS CDSSAVLNEE  240
TSSDNGRLTP PTTVTGGDFL QFVKTEQRED HDDFLGGEEA CGFFSDEQPP SLHWYSASDH  300
WT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025832m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527320.0AK352732.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411810.10.0homeobox-leucine zipper protein ATHB-16
SwissprotQ940J10.0ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLE4MW350.0E4MW35_EUTHA; mRNA, clone: RTFL01-02-C17
TrEMBLV4MKN00.0V4MKN0_EUTSA; Uncharacterized protein
STRINGXP_006411810.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-164homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]