PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10025799m | ||||||||
Common Name | EUTSA_v10025799mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | WRKY | ||||||||
Protein Properties | Length: 310aa MW: 34438.1 Da PI: 7.3768 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.8e-30 | 141 | 199 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ver+ ++p+ ++itY+++Hnhe Thhalv10025799m 141 SDAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERNPQNPEKFTITYTNDHNHE 199 7**************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-31 | 126 | 201 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.24E-26 | 135 | 201 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.569 | 135 | 201 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-35 | 140 | 200 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-25 | 142 | 199 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MGEVAYMDEG DLEAIVRGYS GSGDAFSGES SGGFSPPFCL PNETASFYEP EMETTGLDEL 60 GELYKPFYPF STQTILTSSV SVPEDSRSFR DDKKQQRPRG CLLSNGSRAD HIRIPESKSK 120 KSKKNQQKRV VEQVKEENLL SDAWAWRKYG QKPIKGSPYP RSYYRCSSSK GCLARKQVER 180 NPQNPEKFTI TYTNDHNHEL PTRRNSLAGS TRAKSSQPKP SLTKKSGKQV VSSPTTNPMI 240 TSVDESSVAV QDTGVAEMST YQKVREIEGA SNNLPSDLMS GTGTFPSFTG DFDELLNSQE 300 FFNGYLWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-20 | 131 | 201 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-20 | 131 | 201 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00448 | DAP | Transfer from AT4G23550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10025799m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430046 | 0.0 | KF430046.1 Brassica rapa WRKY transcription factor 29 (WRKY29) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413542.1 | 0.0 | probable WRKY transcription factor 29 | ||||
Swissprot | Q9SUS1 | 0.0 | WRK29_ARATH; Probable WRKY transcription factor 29 | ||||
TrEMBL | V4LWJ3 | 0.0 | V4LWJ3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006413542.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6090 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 1e-169 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10025799m |
Entrez Gene | 18030884 |