PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025793m
Common NameEUTSA_v10025795mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 310aa    MW: 33599.2 Da    PI: 6.641
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025793mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.74.3e-15215251135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg ++  Tp++Rrgp+g++tLCnaCGl++  +g+
  Thhalv10025793m 215 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWTNRGT 251
                      ******999************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.23679114IPR010399Tify domain
SMARTSM009791.2E-1379114IPR010399Tify domain
PfamPF062003.1E-1281113IPR010399Tify domain
PfamPF062033.8E-14147189IPR010402CCT domain
PROSITE profilePS5101711.905147189IPR010402CCT domain
SuperFamilySSF577161.38E-12208264No hitNo description
PROSITE profilePS5011411.49209268IPR000679Zinc finger, GATA-type
SMARTSM004017.1E-16209262IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.9E-15213256IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.72E-16214264No hitNo description
PfamPF003201.8E-12215251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440215242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MFSRHSQPEI IPNQIGSSSA PAAEDHVSAS ATSGHIPYDD MDEIPHPNSV YAASDLLPDG  60
SQLVPHHRSE GSELLGCRPP ERANQLTISF RGQVYVFDAV GPDKVDAVLS LLGASTELSS  120
GQQVMEVAQQ NHLPAVEYQN RCSHPQRAQS LDRFRKKRNA RCFEKKVRYG VRQEVALRMA  180
RNKGQFTSAK MTDGAYNSGT DQDSAQEESH PEISCTHCGI SSKCTPMMRR GPSGPRTLCN  240
ACGLFWTNRG TLRDLSKKTE ENQMLITKPG EGGNDADANN SKSEPATVEE HTALVSLANG  300
DGSNLLGNH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025793m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860380.0AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413426.10.0GATA transcription factor 25
RefseqXP_006413427.10.0GATA transcription factor 25
SwissprotQ9LRH60.0GAT25_ARATH; GATA transcription factor 25
TrEMBLV4MEH60.0V4MEH6_EUTSA; Uncharacterized protein
STRINGXP_006413426.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.20.0GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]