PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025693m
Common NameEUTSA_v10025693mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 329aa    MW: 37401.8 Da    PI: 4.6811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025693mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18116165255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +g+++AeIrdp     r kr++lg+f taeeAa  +++a+ kl+g
  Thhalv10025693m 116 KFRGVRRRP-WGKYAAEIRDPE----RrKRIWLGTFSTAEEAAVVYDNAAIKLRG 165
                      89*******.**********62....34*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-29115173IPR001471AP2/ERF domain
CDDcd000181.36E-31116172No hitNo description
SuperFamilySSF541712.29E-21116174IPR016177DNA-binding domain
PROSITE profilePS5103223.235116173IPR001471AP2/ERF domain
SMARTSM003807.7E-39116179IPR001471AP2/ERF domain
PfamPF008477.4E-11116165IPR001471AP2/ERF domain
PRINTSPR003671.7E-9117128IPR001471AP2/ERF domain
PRINTSPR003671.7E-9139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDENMDFRPV KYTEHKTVIK KYTKKKLPVD KKKMIGRDSA RLVRVCVMDR DATDSSSDDE  60
EFLFPRRRVK RLINEIRVEP SSSGEVSAPI KTGKSITVDS PLQEVSVSGA DHNERKFRGV  120
RRRPWGKYAA EIRDPERRKR IWLGTFSTAE EAAVVYDNAA IKLRGPDALT NFSVPPEPEP  180
VPKPEPESNL SVSSTSESMD DSHHLSSPTS VLNYQISEQW MNRSNRVKQE FLEPEPISWH  240
LGEGNNIDDA FPLDIPFLDN YFNESLPDIS IFDQHMSPLQ SSENDFFNDL MLLDNNTNIG  300
EDNYSSDIKE IGSMFNDLDD SLISDLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20115172159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-20109172971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120139RRRPWGKYAAEIRDPERRKR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025693m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413010.10.0ethylene-responsive transcription factor CRF4
SwissprotQ9SUE31e-163CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLV4MNG60.0V4MNG6_EUTSA; Uncharacterized protein
STRINGXP_006413010.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-131cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]