PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025666m
Common NameEUTSA_v10025666mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 336aa    MW: 36756.7 Da    PI: 5.053
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025666mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.6e-19247281135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Thhalv10025666m 247 CSHCGVQKTPQWRAGPKGAKTLCNACGVRFKSGRL 281
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-9613335IPR016679Transcription factor, GATA, plant
SuperFamilySSF577164.18E-14239303No hitNo description
PROSITE profilePS5011411.833241277IPR000679Zinc finger, GATA-type
SMARTSM004018.6E-17241295IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.9E-15245279IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.82E-14246294No hitNo description
PROSITE patternPS003440247272IPR000679Zinc finger, GATA-type
PfamPF003206.8E-17247281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MERIEAGLKS IIRKEMALKT TPPVYEDFLT VTTVQNDSSA DDFSIDDLLD LSNDDDDDVL  60
AEEDDEPKTQ PDMLCVSSEE PNDDGDALRR SNDFSSGDDF GSLPSNQLSL PADELADLEW  120
LSHFVEDSSA PNLTETPSEK PAWLTGDRKH PVTPATEESC FKSPLPAKTR NKRNRNGVKV  180
KSLGSSSSGP SSSSSTSSSS GPSSPWFTGV ELLEPVLVPK KHKKKSAESV FNGRLPELQQ  240
QPPPRRCSHC GVQKTPQWRA GPKGAKTLCN ACGVRFKSGR LLPEYRPACS PTFSSELHSN  300
HHRKVMEMRR KKDPSDDDTT GLNQLVQSTQ AVPSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025666m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413331.10.0GATA transcription factor 5
SwissprotQ9FH571e-159GATA5_ARATH; GATA transcription factor 5
TrEMBLV4ME800.0V4ME80_EUTSA; GATA transcription factor
STRINGXP_006413331.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-136GATA transcription factor 5