PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025630m
Common NameEUTSA_v10025630mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 346aa    MW: 37804.7 Da    PI: 10.1102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025630mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.1e-31276334259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  Thhalv10025630m 276 SDEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAMMLIVTYEGDHNHA 334
                      69*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.7E-14240273IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.9E-33262334IPR003657WRKY domain
PROSITE profilePS5081130.308270336IPR003657WRKY domain
SuperFamilySSF1182906.41E-26273334IPR003657WRKY domain
SMARTSM007742.4E-37275335IPR003657WRKY domain
PfamPF031062.5E-26277333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAVELMMSSY GGGGRVKGGD SFSTKMEDTA LREAASAGIH GVEEFLKLIG QSQLTEENQT  60
EITAVTDVAV NSFKKVISLL DRSRTGHARF RRAPPTTTAT AKTEDRGGGG EWKTTEEKPE  120
TTTTVMINRQ KTEQYGGSAF RVYCPIPINR RPPLSHNNQT KNGPSLSAPI LSNVRPPHEP  180
PLSTINFAPS PSNSFMSSHR CDTDSNQMSS GFEFTNCPSS QVSGSRGKPP LSSVSLKKRC  240
NSSSSRSCHC TKKRKSRVKR VTRVPAVSSK MADIPSDEYS WRKYGQKPIK GSPHPRGYYK  300
CSSVRGCPAR KHVERALDDA MMLIVTYEGD HNHALVLDSL PDKPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21262335173WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236254KKRCNSSSSRSCHCTKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025630m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841121e-144FJ384112.1 Brassica napus cultivar Westar WRKY transcription factor 7 (WRKY7) mRNA, WRKY7-2 allele, complete cds.
GenBankKM5931541e-144KM593154.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY79) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413456.10.0probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX01e-165WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLV4MEK40.0V4MEK4_EUTSA; Uncharacterized protein
STRINGXP_006413456.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-132WRKY DNA-binding protein 7