PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025593m
Common NameEUTSA_v10025593mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 352aa    MW: 40149.3 Da    PI: 6.9665
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025593mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.9e-31210264256
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      +r+rW+++LH++Fv+a+++LGGs++AtPk+i++lm+v+gLt+++vkSHLQkYR++
  Thhalv10025593m 210 QRRRWSQDLHRKFVDALHRLGGSQVATPKQIRDLMQVDGLTNDEVKSHLQKYRMH 264
                      8****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-17206267IPR009057Homeodomain-like
PROSITE profilePS5129411.921206266IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-28206267IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-24210264IPR006447Myb domain, plants
PfamPF002491.1E-7211262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MVQTDTDRRM GLNLNLSIYS LPKPLSQFLD ELSRIKDNHL KLSEIDGYVG KLEEERKKID  60
VFKRELPLCM LLLNDAIGKL KEEARKGSSV MASNGFDAGE GAKLETDNKK NWMSSAQLWI  120
SNPNSKLQST NEEEDRCVTQ NPFQTGNYPN QGREFLPFNV PPPPPPPQAT APLPLMTPTS  180
QMMMDCSRIE QNHHQLNKPL QSHHIQKKEQ RRRWSQDLHR KFVDALHRLG GSQVATPKQI  240
RDLMQVDGLT NDEVKSHLQK YRMHIRKHPL HPAKTLSPSD QPVLLDRETQ SLISLSRSDS  300
PQSPLVERGL FSNNVGHSSE EAEEEDEEEK SDGRSWKSES KEKRQVLDLE L*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025593m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3166640.0AK316664.1 Arabidopsis thaliana AT4G37180 mRNA, complete cds, clone: RAFL06-70-N17.
GenBankBT0289850.0BT028985.1 Arabidopsis thaliana At4g37180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411945.10.0transcription factor HHO5
SwissprotF4JRB00.0HHO5_ARATH; Transcription factor HHO5
TrEMBLV4MKZ90.0V4MKZ9_EUTSA; Uncharacterized protein
STRINGXP_006411945.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.10.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]