PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025581m
Common NameEUTSA_v10025581mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 354aa    MW: 38349.1 Da    PI: 8.0214
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025581mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.63.2e-3951111262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      k++a++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+
  Thhalv10025581m  51 KDQAINCPRCNSINTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 111
                      7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2949109IPR003851Zinc finger, Dof-type
PfamPF027014.4E-3352109IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.3655109IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105793IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDTAQWPQEI VVKPLEEIVT NTCPKPQPPQ PQQPAAVGTA GGADRKARPE KDQAINCPRC  60
NSINTKFCYY NNYSLTQPRF FCKGCRRYWT EGGSLRNIPV GGGSRKNKRS HSTSISSSSD  120
ISNNHSDTTQ PATKKHLSDH HHHHLMSMSQ QGLTGQNPKF LDTTQQDLNL GFPSHGLVRT  180
NFTDLIHNIG SNNNNNKNAI NNNPLLSSSC SATSAMATSS LDLIRNSNNN GNSLNSSFMG  240
FPVHNQDPTS GGFSMQDHYK PCNTNTTLLG FSLDHHHNNE FHGGFQGREG GEGGDAVNGR  300
HLFPFEDLKL PVSSSSATIN VDINDHQKRA SGGDAAASSP GYWTGMLSGG SWC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025581m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171530.0AK317153.1 Arabidopsis thaliana AT4G24060 mRNA, complete cds, clone: RAFL21-94-L04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413480.10.0dof zinc finger protein DOF4.6
SwissprotQ8LAP81e-178DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLV4MPG40.0V4MPG4_EUTSA; Uncharacterized protein
STRINGXP_006413480.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34332761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-140Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]