PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10025465m | ||||||||
Common Name | EUTSA_v10025465mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | TCP | ||||||||
Protein Properties | Length: 380aa MW: 41785.3 Da PI: 8.1041 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.4 | 6.3e-39 | 48 | 183 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++++ +++++++++ + ++++ +++a Thhalv10025465m 48 SGGKDRHSKVWTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSL-NNTNFPITDDENQNQTLTGAAANSLSKSA 140 689*************************************************************.44443446666666666666667777777 PP TCP 96 .kskksqksaasalnlak.esrakarararertrekmriknkl 136 +s++++++++s l+l++ e r kar+rarert+++ + ++++ Thhalv10025465m 141 cSSNSDTSKNSSGLSLSRsELRDKARERARERTAKETKERDHN 183 6888888888999****99****************99988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.0E-36 | 49 | 179 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.229 | 50 | 108 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.205 | 159 | 180 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MFPKIGDDEM IGDLMKNNNG DVVDNNNNNR LSRWHHNSSR IIRVSRASGG KDRHSKVWTS 60 KGPRDRRVRL SVSTALQFYD LQDRLGYDQP SKAVEWLIKA AEDSISELPS LNNTNFPITD 120 DENQNQTLTG AAANSLSKSA CSSNSDTSKN SSGLSLSRSE LRDKARERAR ERTAKETKER 180 DHNTNSHTTS FTDLLNSGSD PVNTNRQWMA PSSSPAPAQM EYFSSGLILG SGQTHFPIQT 240 NSHPFSSISD HHHHHHPHQE FSFVPDHLIS PAGSNGGGAF NLDFNMSTSS GAGTAVASAG 300 FSGFNRGTLQ SNSTNHHHHH NQSFLANLQR FPSSEGGGPQ FLFGALPAEN HHPHNHNHQF 360 QLYYENGSRN SDQKGKGKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-24 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-24 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10025465m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352797 | 0.0 | AK352797.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-O21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006414109.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_024005115.1 | 0.0 | transcription factor TCP2 | ||||
Swissprot | Q93V43 | 0.0 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | V4MJI1 | 0.0 | V4MJI1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006414109.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7615 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-128 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10025465m |
Entrez Gene | 18030471 |
Publications ? help Back to Top | |||
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