PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10025409m | ||||||||
Common Name | EUTSA_v10025409mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | HSF | ||||||||
Protein Properties | Length: 394aa MW: 45149.2 Da PI: 4.9986 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.9 | 3.8e-34 | 16 | 107 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++ +Lp++Fkh+nf+SF+RQLn+YgF+k + e+ weF+++ F +g+ +l++ Thhalv10025409m 16 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRGLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANEDFVRGEPHLMK 100 9**************************************************************99988.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r+k Thhalv10025409m 101 NIHRRKP 107 ****985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.5E-34 | 11 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.6E-61 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.9E-37 | 13 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.5E-30 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.1E-19 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.1E-19 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.1E-19 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MDESNHGGSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRGLLPRFFK 60 HNNFSSFIRQ LNTYGFRKAD PEQWEFANED FVRGEPHLMK NIHRRKPVHS HSLPNLQAQQ 120 NPLTDSERQR MNNQIERLTK EKEGLLEELH KQEEEREVFE QQVKKLKDQL QHMEKRQKTM 180 VSFVSQVLEK PGLALNLSPS LPETNERKRR FPRLGFEPML EENQTCVVAR EEGSTSPSSH 240 TTEHQVEQLE SSIAIWENLV SESCESMAQS TRSMMTLDVD ESSTCPESPP LSCIQLSIDT 300 RPKCPPSPRI IDMNSEPDVS KEQSTVAPAP PPPAAGVNDV FWQQFLTENP GSAEQREVQL 360 ERKDDKAEDR SEKCWWNSRN VNTITEQLEH LTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-21 | 11 | 105 | 15 | 120 | Heat shock factor protein 1 |
5d5u_B | 1e-21 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-21 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-21 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00443 | DAP | Transfer from AT4G18880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10025409m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352516 | 0.0 | AK352516.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-A16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006414044.1 | 0.0 | heat stress transcription factor A-4a | ||||
Swissprot | O49403 | 0.0 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | E4MVG9 | 0.0 | E4MVG9_EUTHA; mRNA, clone: RTFL01-01-A16 | ||||
TrEMBL | V4MJD7 | 0.0 | V4MJD7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006414044.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2853 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 0.0 | heat shock transcription factor A4A |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10025409m |
Entrez Gene | 18030289 |
Publications ? help Back to Top | |||
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