PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025371m
Common NameEUTSA_v10025371mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRF
Protein Properties Length: 401aa    MW: 43955.6 Da    PI: 7.633
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025371mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC771.8e-24156200145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+ep+rC+RtDGKkWRCsr+v++++k+CErH h++r rsrk++e+
  Thhalv10025371m 156 DMEPWRCKRTDGKKWRCSRNVIPDQKYCERHTHKSRPRSRKPVES 200
                      79****************************************997 PP
2QLQ55.51.7e-1987122237
              QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      aF+ aQ+q+L++Q  +yKy++a++PvP+eLl +i+k
  Thhalv10025371m  87 AFSEAQWQELERQRNIYKYMMASVPVPSELLTPIPK 122
                      8********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.8E-1286122IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-1287120IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.76287122IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.432156200IPR014977WRC domain
PfamPF088793.4E-20157199IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MVLPHHHHHH QYPSYSSPSS ASLCYYSAGV GDSMFSASSN QSYTSSLGEM FSLAGSNSAA  60
VSVADPFFTL SSSGEMGRSM SEKEGAAFSE AQWQELERQR NIYKYMMASV PVPSELLTPI  120
PKNPSNTNNS DVTVAVAKGS SLKLGIASNA INNAADMEPW RCKRTDGKKW RCSRNVIPDQ  180
KYCERHTHKS RPRSRKPVES SHHNDFRAAK NDTNQLAKPY PQFYGQPVSQ FSVPCALPSA  240
SSSYDHHREF RWFMKEGDAI ATLSPAIHEA AQVKVGSSRE LKRGFNYDLN FRQKEPLVDQ  300
SFGALQGLLS PNQTPHNQET RRFFVERDQD EAMGSSLTLS MAGGAMEEAE GTNQHQWISH  360
EGPSWLCSTT PGGPLAEALC LGVSNNPSTS NTSSCSRSSS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025371m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1096191e-140AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project).
GenBankAL1615611e-140AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61.
GenBankATAC0023431e-140AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence.
GenBankCP0026871e-140CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413469.20.0growth-regulating factor 8 isoform X1
SwissprotQ9SU440.0GRF8_ARATH; Growth-regulating factor 8
TrEMBLV4MHX20.0V4MHX2_EUTSA; Uncharacterized protein
STRINGXP_006413469.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.10.0growth-regulating factor 8
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]