PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10025090m

Common Name

EUTSA_v10025090mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HSF

Protein Properties

Length: 477aa MW: 53244.3 Da PI: 7.0035

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10025090m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.3	6.8e-35	29	119	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+ye+++d+++++++sws+++nsf+v+++ ef++ +LpkyFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ll+ Thhalv10025090m 29 FLVKTYEMVDDSSTDQIVSWSSTNNSFIVWNHAEFSRLLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFSNDDFIKDQKHLLK 113 9**************************************************************999.........************* PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i+r+k Thhalv10025090m 114 NIHRRK 119 **98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.18E-35	25	118	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.1E-61	25	118	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.9E-37	25	118	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	4.0E-30	29	118	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.8E-20	29	52	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.8E-20	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	68	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.8E-20	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MSGALGYPSA SVSVGGSGGG EGAGGPAPFL VKTYEMVDDS STDQIVSWSS TNNSFIVWNH 60 AEFSRLLLPK YFKHNNFSSF IRQLNTYGFR KIDPERWEFS NDDFIKDQKH LLKNIHRRKP 120 IHSHTHPPAS SSVDQERATL QEQMDKLSRE KAAIEAKLLK FKHQKSTAKH QLHEMTEHVD 180 DMEKRQKKLL DFLETAIRNP IFIKNFGRKI EELDVSAYNK KRRLPQVQQS KPPSEDSHLD 240 NSSGSSKPES GNIFHQSFSN KLRLELSPAV SDMNMVSHSI QSSNEEGVSP KGILSGGDPK 300 ATQIRREGLP FAPEALELAD TGSCPRRLLL NDNTRTETLL TSSEETDGSF SCHLNLTLAS 360 APLPDKTASQ IAKTAHKSQE IGRCTEINFK SIETSVSEKN QGKQEEAVPG GKQANAAPPA 420 RVNDVFWEHF LTERPGPLDN EEASSTYRGN PYEEQEERRN GNMMSRNTTN IEQLTL*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MSGALGYPSA SVSVGGSGGG EGAGGPAPFL VKTYEMVDDS STDQIVSWSS TNNSFIVWNH  60
AEFSRLLLPK YFKHNNFSSF IRQLNTYGFR KIDPERWEFS NDDFIKDQKH LLKNIHRRKP  120
IHSHTHPPAS SSVDQERATL QEQMDKLSRE KAAIEAKLLK FKHQKSTAKH QLHEMTEHVD  180
DMEKRQKKLL DFLETAIRNP IFIKNFGRKI EELDVSAYNK KRRLPQVQQS KPPSEDSHLD  240
NSSGSSKPES GNIFHQSFSN KLRLELSPAV SDMNMVSHSI QSSNEEGVSP KGILSGGDPK  300
ATQIRREGLP FAPEALELAD TGSCPRRLLL NDNTRTETLL TSSEETDGSF SCHLNLTLAS  360
APLPDKTASQ IAKTAHKSQE IGRCTEINFK SIETSVSEKN QGKQEEAVPG GKQANAAPPA  420
RVNDVFWEHF LTERPGPLDN EEASSTYRGN PYEEQEERRN GNMMSRNTTN IEQLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	8e-25	20	118	17	129	Heat shock factor protein 1
5d5v_B	8e-25	20	118	17	129	Heat shock factor protein 1
5d5v_D	8e-25	20	118	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10025090m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352978	0.0	AK352978.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-M02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006414835.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	0.0	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	E4MWT1	0.0	E4MWT1_EUTHA; mRNA, clone: RTFL01-15-M02
TrEMBL	V4MSL4	0.0	V4MSL4_EUTSA; Uncharacterized protein
STRING	XP_006414835.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	0.0	HSF family protein

Link Out ? help Back to Top
Phytozome	Thhalv10025090m
Entrez Gene	18029936

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]