PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024980m
Common NameEUTSA_v10024980mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 502aa    MW: 55327.9 Da    PI: 7.1645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024980mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.25.6e-35481961128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 
                      lp+G++F+Ptd+el+ e+L++kv  k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+         
  Thhalv10024980m  48 LPAGVKFDPTDQELI-EHLEAKVLVKDIKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtesdnni 139
                      799************.99******9995543233444334666646**********.555666799******************8799999999 PP

              NAM  78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Thhalv10024980m 140 qgsssSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 196
                      9987666788************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-3840215IPR003441NAC domain
PROSITE profilePS5100532.93848215IPR003441NAC domain
PfamPF023651.4E-1549196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MNKSNPTGSV TGSDVIDAKI EEHQLCGSKK CPSCGHKLEG KPQDWVGLPA GVKFDPTDQE  60
LIEHLEAKVL VKDIKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTESDNNIQ GSSSSGETRW HKTGKTRPVM VNGKQKGCKK ILVLYTNFGK  180
NRKPEKTNWV MHQYHLGTHE EEKEGELVVS KIFYQTQPRQ CNWSSSTASL NAISGGSGGG  240
GEASSGGGGG EYHMRRDSGT TSGGSCSSSR EIMNVNPSNR SDEVVGVGGG AMTVAAAAVA  300
AGLPSYAMDQ LSFFPFMKSF DEVARRETTT AQATCEDVMA EQHRHRHHRH QASPSSTSHH  360
VAHDHHHQQQ QRHHAFNISQ PTHPISTIIS PSSSLHHASV NILDDNPYHV HRILLPNENY  420
QTQQQQQQRH QEREEEHNDG KMGGRSASGL EELIMGCTSS TSHHDVKDGS PSMGNQQESE  480
WLKYSTFWPA PDSSDNQDHH G*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024980m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615740.0AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412861.10.0NAC domain-containing protein 75 isoform X1
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLV4MCY10.0V4MCY1_EUTSA; Uncharacterized protein
STRINGXP_006412861.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66352643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.10.0NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]