PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10024940m | ||||||||
Common Name | EUTSA_v10024940mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | GATA | ||||||||
Protein Properties | Length: 517aa MW: 57362.5 Da PI: 7.9901 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 45.4 | 1.1e-14 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Thhalv10024940m 7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 99**************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.5E-8 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.7E-10 | 5 | 46 | No hit | No description |
CDD | cd00202 | 3.11E-15 | 6 | 51 | No hit | No description |
Pfam | PF00320 | 2.0E-12 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.1E-11 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 7.9E-9 | 275 | 367 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RADCDDHEDH 60 QRYQRMKSIS MSSKNKETKM LKRKAIQENI SIKRPLLEFN YGLKKAVVEE DASNRSSSGS 120 AISNSESCAQ FSSADGSELT GPSQSNTWDT TVPSKRRTCV GRPKSSSVEK LRKDLYNILQ 180 EQQSSCLSVS SEEDLLFGNE MSMVSVEIGH GSVLMRNPHS FAREEESEAS SLSSVENKSS 240 ISEAYSHSVK RAEIGGERGS DSFGQAIKHE QLRRTKSQSG RVHVLGSHSS PLCSIDLKEV 300 FNFDEFIEQF TEEEQKKLMK LLPQIDSINL PDSLRMMFES AQFKENFSLL QKLIADGVFE 360 MPSSSGAKLE DIRTFKKLAL SDFNKSRLVE GYNLLKEQEK GSGDSATTTS RISNPNVPKN 420 IITIKRRCEN QTQLKSESRG LMRSPKSVTK MKTSHESKVM TENNVSCFSP KSLVFAQESG 480 STVFGYEGSC SSDQDLLLLD LPSNGSFPQA ELLHQL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10024940m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353240 | 0.0 | AK353240.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-J12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006414213.1 | 0.0 | GATA transcription factor 26 isoform X1 | ||||
Swissprot | Q8W4H1 | 0.0 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | E4MXJ3 | 0.0 | E4MXJ3_EUTHA; mRNA, clone: RTFL01-27-J12 | ||||
TrEMBL | V4P7U0 | 0.0 | V4P7U0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006414213.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 0.0 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10024940m |
Entrez Gene | 18030141 |