PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10024915m | ||||||||
Common Name | EUTSA_v10024915mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | GRF | ||||||||
Protein Properties | Length: 525aa MW: 57221.6 Da PI: 9.5652 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.5 | 6.3e-25 | 217 | 260 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Thhalv10024915m 217 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 260 79***************************************998 PP | |||||||
2 | QLQ | 55.2 | 2.1e-19 | 153 | 189 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+++L++Q+l+yKy+ an+PvP+ Ll +i+k Thhalv10024915m 153 GPFTLTQWAELEQQALIYKYITANVPVPSSLLIPIKK 189 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.7E-12 | 153 | 189 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.979 | 154 | 189 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.3E-13 | 154 | 187 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.77 | 217 | 261 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.4E-21 | 218 | 260 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MDIRTHILGS VTSNERSKQD RSGFDGEDCL QRSSKLARTT ITTTAEEENL SSSYGAAYCK 60 TMSFHQGIPL MRSASLLSSD SRRQEQMLSF SDKPEALNFS RCVGLESSYN NKNSLPPFLH 120 QIPPPYCRSS GGYGSGGTMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP 180 SSLLIPIKKS FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD 240 QKYCERHINR GRHRSRKPVE VQSGQTATAA AASKAVTTPP QSLVAGGSNK NIARASRNRS 300 LATGAQHINP STDSLPNNRV RNLQGSLVYP STVSLQPKES PFVHQKQRNN PFEFGHISSD 360 SLLNPNSGKS YGSSYLDFSS NQDKQPGNLN HNSWPEGVKS DWTQLSMSIP IASSSPSSTH 420 NTGQDKLTLS PLRLSREFDL SIHSEETSEP VKKVNTWIPI SWGSSLGGPL GEVLNSTTNS 480 PTLGSSPTGV LQKSTFCSLS NSSSVSSPIA EHNRNNGDYF HYTT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10024915m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411855.1 | 0.0 | growth-regulating factor 2 | ||||
Swissprot | Q8L8A8 | 0.0 | GRF2_ARATH; Growth-regulating factor 2 | ||||
TrEMBL | V4MKR3 | 0.0 | V4MKR3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411855.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1454 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 0.0 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10024915m |
Entrez Gene | 18030102 |
Publications ? help Back to Top | |||
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