PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024915m
Common NameEUTSA_v10024915mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRF
Protein Properties Length: 525aa    MW: 57221.6 Da    PI: 9.5652
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024915mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.3e-25217260144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
  Thhalv10024915m 217 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 260
                      79***************************************998 PP

2QLQ55.22.1e-19153189137
              QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      ++FT +Q+++L++Q+l+yKy+ an+PvP+ Ll +i+k
  Thhalv10024915m 153 GPFTLTQWAELEQQALIYKYITANVPVPSSLLIPIKK 189
                      59*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.7E-12153189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.979154189IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-13154187IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.77217261IPR014977WRC domain
PfamPF088793.4E-21218260IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MDIRTHILGS VTSNERSKQD RSGFDGEDCL QRSSKLARTT ITTTAEEENL SSSYGAAYCK  60
TMSFHQGIPL MRSASLLSSD SRRQEQMLSF SDKPEALNFS RCVGLESSYN NKNSLPPFLH  120
QIPPPYCRSS GGYGSGGTMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP  180
SSLLIPIKKS FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD  240
QKYCERHINR GRHRSRKPVE VQSGQTATAA AASKAVTTPP QSLVAGGSNK NIARASRNRS  300
LATGAQHINP STDSLPNNRV RNLQGSLVYP STVSLQPKES PFVHQKQRNN PFEFGHISSD  360
SLLNPNSGKS YGSSYLDFSS NQDKQPGNLN HNSWPEGVKS DWTQLSMSIP IASSSPSSTH  420
NTGQDKLTLS PLRLSREFDL SIHSEETSEP VKKVNTWIPI SWGSSLGGPL GEVLNSTTNS  480
PTLGSSPTGV LQKSTFCSLS NSSSVSSPIA EHNRNNGDYF HYTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024915m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411855.10.0growth-regulating factor 2
SwissprotQ8L8A80.0GRF2_ARATH; Growth-regulating factor 2
TrEMBLV4MKR30.0V4MKR3_EUTSA; Uncharacterized protein
STRINGXP_006411855.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.10.0growth-regulating factor 2
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]