PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024906m
Common NameEUTSA_v10024906mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TALE
Protein Properties Length: 526aa    MW: 58719.3 Da    PI: 5.6504
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024906mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-083263631954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  Thhalv10024906m 326 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 363
                      664459******************************88 PP
2BELL126.78.5e-41193264172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqe+q+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag g+akpYt+lAl++iSrhFr+L+dai++qi
  Thhalv10024906m 193 ERQEMQSKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGSGAAKPYTALALQTISRHFRSLRDAISGQI 264
                      79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-71128262IPR006563POX domain
PfamPF075266.4E-49134261IPR006563POX domain
PROSITE profilePS5007111.758304367IPR001356Homeobox domain
SMARTSM003891.0E-8307371IPR001356Homeobox domain
CDDcd000863.93E-11307368No hitNo description
SuperFamilySSF466891.54E-16308373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26310372IPR009057Homeodomain-like
PfamPF059201.0E-17324363IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MENYPETPFL PGNAIIHMNP TVSYSDELAG RERTEASNVS ASQERQVLSR FGGISQMQDI  60
QDFGSWRDQA MAGTTGVLQT GQGLSLSLGS QILPGIHQMS HQSMEPRAEN FRGNEYTTQS  120
FPGGNQNLDA VRTIPNSKYL KAAQQLLDEA VNVKKALKQF QAEGDKNNEN PQKPDQNLQD  180
SSTNPPPEIS QSERQEMQSK LTKLLSMLDE VDRRYKQYYQ QMQIVVSSFD VIAGSGAAKP  240
YTALALQTIS RHFRSLRDAI SGQILETRKC LGEQDGSDGN RVGIISRLKY VDQHLRQQRG  300
FMQPQAWRPQ RGLPENSVLI LRAWLFEHFL HPYPKDSDKI MLARQTGLSR GQVSNWFINA  360
RVRLWKPMVE EIYKEEFTEN DSNSSSENTP KMSEIGPGAA DDEDRTQDFA QDRNKPDHGH  420
GYGVETCGMV QGDQMDGRRF VTVEPTYHVA EMSRFGGGSG VSLTLGLQNS QGHDNVVAMS  480
SEAYNNFSGV DIYEKAIVGA ELEYVNPVSR QNRIGSSQLV HDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14313371563Homeobox protein Meis2
3k2a_B1e-14313371563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024906m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531440.0AK353144.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-H08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412205.10.0BEL1-like homeodomain protein 6 isoform X1
SwissprotO656850.0BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLV4MLP30.0V4MLP3_EUTSA; Uncharacterized protein
STRINGXP_006412205.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.20.0BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]