PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024751m
Common NameEUTSA_v10024751mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 589aa    MW: 66541.4 Da    PI: 4.345
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024751mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-09433474144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r rW++++ el++++++++G++  + + + ++ +Rt++q+k+++
  Thhalv10024751m 433 RTRWSKQDTELFYEGIQEFGSN-LSMVQQLFP-NRTREQIKLKF 474
                      78******************99.*********.*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159635.7E-23426505No hitNo description
Gene3DG3DSA:1.10.10.602.2E-6430475IPR009057Homeodomain-like
PROSITE profilePS5129310.461431482IPR017884SANT domain
SMARTSM007171.1E-8432480IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-9434484IPR009057Homeodomain-like
CDDcd001672.09E-5435475No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MDLDFDDQPL DHAAPAAKAG ARFKPKGRPQ PKKKQVSLLT SQPTLPTDVA KEKLSTQSEH  60
LVSVDASSAY PNKFSTSETI VPDSGTINQS TGGTISKENV DVFLGRVSWC MEPSVLRACT  120
NVNLEGKRCD DGINPDDPRA QDSAAFGDFV TPETDEEEES HLDMETLDIV QEEGMTRAYE  180
HHTGKFQPKP RLLDTVIEEP ESHYSVDDTG YFTTGTNESE FMANVESRND FNTNTTFYRE  240
LQEEPRETVP EMEAQNASGG REHEERTNNT VIGEEENCLG STVEERPGRE RKKGRSKGAT  300
ARKRKITGEE DPNKTSENPQ KKKFKHSSRR QRKRTVEKEL LETPDDEIRF LPIKDMLRLV  360
EYKEWMEKKE AKGAAVVPPA QESNTNASDN QYYSQGFDAE DEFGIEENEN QETNVVKPDS  420
PVNYQTYMNK TSRTRWSKQD TELFYEGIQE FGSNLSMVQQ LFPNRTREQI KLKFKLEERR  480
YPLKLNDALS NLTHFQNVIK KLQQEAAAAR EGEEEEEEEE EEEAGAEAET TTDVPENEEP  540
TKSEETERAG DGIAGVKESD GGDIENGVRS DGEDEGDDDF WNSYKSDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290304RKKGRSKGATARKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024751m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005819.10.0transcription factor TFIIIB component B'' homolog
TrEMBLV4P1I10.0V4P1I1_EUTSA; Uncharacterized protein
STRINGXP_006411718.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.10.0MYB_related family protein