PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10024688m | ||||||||
Common Name | EUTSA_v10024688mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bHLH | ||||||||
Protein Properties | Length: 622aa MW: 67476.6 Da PI: 4.669 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 450 | 495 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Thhalv10024688m 450 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 495 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.6E-54 | 65 | 266 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.282 | 446 | 495 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.45E-15 | 449 | 500 | No hit | No description |
SuperFamily | SSF47459 | 1.03E-18 | 449 | 516 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.1E-19 | 450 | 515 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-10 | 450 | 495 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-17 | 452 | 501 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043425 | Molecular Function | bHLH transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MSPPDVQLTD CHLNQSTTGT NLWSTDDDAS VMEAFIGSEH SSLWPLPPTL PPPPPSQSQA 60 GEDTLQQRLQ ALIEGARESW TYAVFWQLSY DFAGEDDGGG GGGSINTPLL GWSDGYYKGE 120 EEKKSRKKKP NPASAADQEH RKRVIQELNS LISGGGGGGT VNGGGNSDEA GDEEVTDTEW 180 FFLVSMTQSF INGSGLPGQA FSDSQTIWLS GSNALAGSSC ERARQGQIYG LETMVCIPAE 240 NGVVELGSSE IIHQSSDLIG KVRSFFNFNN GGGGESGSWA FNLTPDQGEN DPAMWISEPN 300 VAGIESGLVA PAMNTGNNST SNSDSHPISK LCNGSSVENP KISSSGFNNH PKSSEIVSFK 360 NGIENGFSGQ SRFVEEDSNK KRCLVSDNEE GMLSFTSVLP RPTKSGDSNH SDLDASVVKE 420 AESNRTVVEP EKKPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYSLR AVVPNVSKMD 480 KASLLGDAIS YINELKSKLQ KVESDKEELQ KQIDVMSNEN GKCSGGDRKY LNQDSGVSIE 540 MEIDVKIIGW DAMIRIQCSK RNHPGAKFME ALKDLDLEVN HASLSVVNDF MIQQATVKMG 600 NQFFTQDQLK ASLMEKVGEC P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 4e-84 | 17 | 262 | 1 | 227 | Transcription factor MYC3 |
4ywc_A | 4e-84 | 17 | 262 | 1 | 227 | Transcription factor MYC3 |
4ywc_B | 4e-84 | 17 | 262 | 1 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 431 | 439 | KKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in jasmonic acid (JA) gene regulation. With MYC2 and MYC3, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00086 | PBM | Transfer from AT4G17880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10024688m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006414178.1 | 0.0 | transcription factor MYC4 | ||||
Swissprot | O49687 | 0.0 | MYC4_ARATH; Transcription factor MYC4 | ||||
TrEMBL | V4P7R1 | 0.0 | V4P7R1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006414178.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1265 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10024688m |
Entrez Gene | 18030435 |