PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10024686m | ||||||||
Common Name | EUTSA_v10024686mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ARR-B | ||||||||
Protein Properties | Length: 624aa MW: 68612.2 Da PI: 7.0533 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91 | 1.1e-28 | 210 | 263 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ Thhalv10024686m 210 KPRVVWSVELHQQFVAAVNQL-GVDKAVPKKILEMMNVPGLTRENVASHLQKYRI 263 79*******************.********************************7 PP | |||||||
2 | Response_reg | 75.2 | 2.4e-25 | 30 | 138 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl+vdD+++ +++l+++l + y +v+ + +e al +l++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ +l+ + Thhalv10024686m 30 VLVVDDDKTCLKILERMLMNCLY-RVTKCNRAEIALSMLRKNKngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLQGVTH 121 89*********************.***************999889**********************6644.8********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l Kp+ +e+l + Thhalv10024686m 122 GAVDYLIKPVRIEALKN 138 *************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.6E-178 | 11 | 615 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.0E-40 | 27 | 179 | No hit | No description |
SuperFamily | SSF52172 | 6.69E-34 | 27 | 152 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.0E-28 | 28 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 40.245 | 29 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.9E-22 | 30 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.06E-26 | 31 | 143 | No hit | No description |
PROSITE profile | PS51294 | 11.323 | 207 | 266 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.63E-20 | 208 | 267 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-30 | 209 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-24 | 210 | 263 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.5E-9 | 212 | 262 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MINPGHGRGP DSSVVGGSSN SDPFPAGLRV LVVDDDKTCL KILERMLMNC LYRVTKCNRA 60 EIALSMLRKN KNGFDIVISD VHMPDMDGFK LLEHVGLEMD LPVIMMSADD SKSVVLQGVT 120 HGAVDYLIKP VRIEALKNIW QHVVRKKRNV SEHSGSVEDV GGGDRQQQRN DADNNSSSAN 180 EGNWRSSRKR KEEEVEEQGE DKEDTSSLKK PRVVWSVELH QQFVAAVNQL GVDKAVPKKI 240 LEMMNVPGLT RENVASHLQK YRIYLRRLGG VSQHQGGNMN HSFMNVQDPL STLNGFDLQA 300 LAVAGQSLAH LQAAGHGRSS LTKPGMSVPP LADQRSIFSF ENPKTRQTMN LVGNNKQMNL 360 LHGVPTGMEP KQFTGSHMRV QQNVQSSGML MPVADQLPRG GPAMLPSLRQ QPMLSSSVSR 420 RSDLTDAVAS SRVLPATTHS VFNSFPLASA PGISIPVSVS CQEEVNSSDA KGGSLAATGF 480 GNPSYDIFSE FPQQNNNNNK RNDWDLRNIG LVYNTHQDTS AFSTSEAYSS SSTQRKRQEA 540 ELTEQQHQPL NRSLNHMNQV YMNGGGSVRV KSERVAETVT CPPAITMFHE QYNQEDLLSA 600 LLKQEGIPSE FDFDGYSIDN IPV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-21 | 206 | 268 | 1 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10024686m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ473521 | 0.0 | DQ473521.1 Arabidopsis thaliana ARR2 (ARR2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006414393.1 | 0.0 | two-component response regulator ARR2 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | V4P895 | 0.0 | V4P895_EUTSA; Two-component response regulator | ||||
STRING | XP_006414393.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2403 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10024686m |
Entrez Gene | 18028547 |