PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10024624m

Common Name

EUTSA_v10024624mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

CPP

Protein Properties

Length: 663aa MW: 72090.9 Da PI: 5.7065

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10024624m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.6	3.8e-16	359	397	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk Thhalv10024624m 359 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 397 689**********************************96 PP
2	TCR	52.6	9.3e-17	444	482	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN Thhalv10024624m 444 RHKRGCNCKKSNCLKKYCECFQGGVGCSINCRCEGCKNA 482 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.3E-19	358	399	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.6	359	484	IPR005172	CRC domain
Pfam	PF03638	6.3E-12	361	396	IPR005172	CRC domain
SMART	SM01114	2.1E-17	444	485	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.9E-12	446	482	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence Send to blast
MDTPQKSITQ IGTPISKSKF EDSPLFNYIN SLSPIRPVKS IPIPHHFSSL NFTSPPSVFT 60 SPHLTSSHKE SRFFKTHNSS SDPTNPVEES TSNEEVAAAE AGDASIGEEA SIEMELPQII 120 KYDRDDPVAA SPCGRETVDL SLVPYSPPRG ENGSSEDASG MELQKMYDEN VQGKNETPDW 180 ESLISDASEL LIFGSPNDSE AFRCLMMQRA STSGVEIPKM QPGSKNEPES SDAIPCEAVS 240 FLHRGIRRRC LDFEMPGNKQ TSSESNTSAC GSSSRCVLPS IGLHLNAILM SSKDSCSGNI 300 QVGLQGSSST LQESLVIQTE NETPEDADQD VPVEPAMEEL HLSSPKKKRL KLEAGEGESC 360 KRCNCKKSKC LKLYCECFAA GVYCIEPCSC IDCFNKPIHE DTVLATRKQI ESRNPLAFAP 420 KVIRSSDSVI ETGDDASKTP ASARHKRGCN CKKSNCLKKY CECFQGGVGC SINCRCEGCK 480 NAFGRKDGSS TVDMEAEQEE ENETSEKSKT AKTQQNTEVL MRKEESSVLP TTPMSMYRQQ 540 LVQLPFSSSK NMMPPPQSLL GGGSSSSGIF NSQYLRKQDI SLIQSRTKKS FETVTEDGVA 600 EMPEILSHSS IDKIKAVSPN GKRVSPPHLD SSSPGSILGR RSGGRKLILN SIPSFPSLTP 660 QH*

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence Send to blast

MDTPQKSITQ IGTPISKSKF EDSPLFNYIN SLSPIRPVKS IPIPHHFSSL NFTSPPSVFT  60
SPHLTSSHKE SRFFKTHNSS SDPTNPVEES TSNEEVAAAE AGDASIGEEA SIEMELPQII  120
KYDRDDPVAA SPCGRETVDL SLVPYSPPRG ENGSSEDASG MELQKMYDEN VQGKNETPDW  180
ESLISDASEL LIFGSPNDSE AFRCLMMQRA STSGVEIPKM QPGSKNEPES SDAIPCEAVS  240
FLHRGIRRRC LDFEMPGNKQ TSSESNTSAC GSSSRCVLPS IGLHLNAILM SSKDSCSGNI  300
QVGLQGSSST LQESLVIQTE NETPEDADQD VPVEPAMEEL HLSSPKKKRL KLEAGEGESC  360
KRCNCKKSKC LKLYCECFAA GVYCIEPCSC IDCFNKPIHE DTVLATRKQI ESRNPLAFAP  420
KVIRSSDSVI ETGDDASKTP ASARHKRGCN CKKSNCLKKY CECFQGGVGC SINCRCEGCK  480
NAFGRKDGSS TVDMEAEQEE ENETSEKSKT AKTQQNTEVL MRKEESSVLP TTPMSMYRQQ  540
LVQLPFSSSK NMMPPPQSLL GGGSSSSGIF NSQYLRKQDI SLIQSRTKKS FETVTEDGVA  600
EMPEILSHSS IDKIKAVSPN GKRVSPPHLD SSSPGSILGR RSGGRKLILN SIPSFPSLTP  660
QH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-16	363	481	14	120	Protein lin-54 homolog
5fd3_B	2e-16	363	481	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	344	351	PKKKRLKL

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00433	DAP	Transfer from AT4G14770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10024624m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161539	1e-105	AL161539.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39.
GenBank	CP002687	1e-105	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z97337	1e-105	Z97337.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006414644.1	0.0	protein tesmin/TSO1-like CXC 2
Swissprot	F4JIF5	0.0	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	V4MKR9	0.0	V4MKR9_EUTSA; Uncharacterized protein
STRING	XP_006414644.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Thhalv10024624m
Entrez Gene	18028736

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]