PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10024601m | ||||||||
Common Name | EUTSA_v10024601mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ARF | ||||||||
Protein Properties | Length: 673aa MW: 74007.7 Da PI: 6.6086 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.3 | 1.7e-24 | 120 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF+ + Thhalv10024601m 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFM--RA 209 89****************************985444444..8999*********************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ Thhalv10024601m 210 ENGDLCVGIRRA 221 88999****997 PP | |||||||
2 | Auxin_resp | 116 | 3.4e-38 | 279 | 362 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a t+ +FevvY+PrastseF+vk+ +v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ Thhalv10024601m 279 AATLAITGRPFEVVYYPRASTSEFCVKALDVRAAMRIPWCSGMRFKMAFETEDSSRISWfMGTVSAVNVSDPIRWPNSPWRLLQ 362 6788999***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-39 | 112 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.72E-30 | 115 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.69E-22 | 118 | 220 | No hit | No description |
SMART | SM01019 | 7.1E-23 | 120 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.352 | 120 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-22 | 120 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-32 | 279 | 362 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.797 | 586 | 666 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MINVMNPMKG GSEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI 60 PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEFVDHE YVDGEDSNGF DSNSEKTPSF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP 180 RRHLLTTGWS NFVNQKKLVA GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG 240 GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTSESVIEAA TLAITGRPFE VVYYPRASTS 300 EFCVKALDVR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL 360 LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR KKMRLPQHTD YNNLINSIPV 420 PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNG PPPSHPPPPA 480 TSSLPLSPPL GLRNIDSRNE KGFCFLTMGT APCNDTEAKK SHIVLFGKLI LPEEQISGST 540 DTANVEKTQI SSGGSNQNCV AGRELSSSDE GSPCSNKVHD AGGLETGHCK VFMESDDVGR 600 TLDLSVLGSY EELNRKLSDM FGIQNSEMLS SVLYRDASGA IKYAGNEPFS EFLKTARRLT 660 ILTEQGSESV VI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-77 | 2 | 383 | 37 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10024601m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006412761.1 | 0.0 | auxin response factor 16 | ||||
Swissprot | Q93YR9 | 0.0 | ARFP_ARATH; Auxin response factor 16 | ||||
TrEMBL | V4MCQ2 | 0.0 | V4MCQ2_EUTSA; Auxin response factor | ||||
STRING | XP_006412761.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10024601m |
Entrez Gene | 18030906 |