PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024554m
Common NameEUTSA_v10024554mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ARF
Protein Properties Length: 708aa    MW: 79906.9 Da    PI: 8.2518
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024554mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.3e-24191292199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + 
  Thhalv10024554m 191 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RG 280
                      88****************************9643..445569************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+v+r+
  Thhalv10024554m 281 ENGELRVGVRRA 292
                      9999******97 PP
2Auxin_resp1095.2e-36317396183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a ha++t+++F+v+Y+Pr+  s+F+++++k+++a+++k+svGmRfkm+fe+eds+er++sGtvvg +d++p +W++SkWr+L+
  Thhalv10024554m 317 ACHATQTRTMFTVYYKPRT--SQFIISLNKYLEAMTNKFSVGMRFKMRFEGEDSPERSFSGTVVGGKDCSP-HWKDSKWRCLE 396
                      6899**************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-38182320IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-42184306IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-20189291No hitNo description
PROSITE profilePS5086312.731191293IPR003340B3 DNA binding domain
PfamPF023624.2E-22191292IPR003340B3 DNA binding domain
SMARTSM010194.6E-24191293IPR003340B3 DNA binding domain
PfamPF065075.6E-32317395IPR010525Auxin response factor
PfamPF023091.1E-7576632IPR033389AUX/IAA domain
SuperFamilySSF542771.96E-12591672No hitNo description
PROSITE profilePS5174526.211596696IPR000270PB1 domain
PfamPF023091.1E-6639684IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MVVVGFKASC LFISLKGAEV VKTYVIASSL NRRERRLKSK VFVCLVIERS FNQLWIFGFL  60
TLRRAAGYKL ELMANRGGDG GGEHLYDELW KLCAGPLVNV PQAEERVYYF PQGHMEQLEA  120
STQQDLNTMK PLFNLPPKIL CRVMNVRLQA EKDTDEVYAQ ITLIPEGTQV DEPMSPDPSP  180
PETQRPKVHS FSKVLTASDT STHGGFSVLR KHATECLPPL DMTQQTPTQE LVAEDVHGYQ  240
WKFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDTFVFLRG ENGELRVGVR RANRQQSSMP  300
SSVISSHSMH LGVLATACHA TQTRTMFTVY YKPRTSQFII SLNKYLEAMT NKFSVGMRFK  360
MRFEGEDSPE RSFSGTVVGG KDCSPHWKDS KWRCLEVHWD EPASISRPDK VSPWEIEPFV  420
TSENVPQSVV LKNKRPRQVS EVSALGITAS NLWSSALTQS HEFAQSCITS QRNSPKQYYR  480
DAIEDAKNPD WPISPYSVSN VSKDSTLNDQ MVFPVKQKKP ETTASYRLFG IDLMSSSIAA  540
SEEKTAAMRP INITKPTPES NSDPKSEISK VSEEKKQEPA QASPKEVQSK QSSSTRSRTK  600
VQMQGVPVGR AVDLTVLSGY SELIDDLEKL FDIKDELRSR SQWEIVFTDD EGDMMLVGDD  660
PWPEFCNMVK RIFIWSKEEV KKMTPGNQLR MLLTEVETAS KTDNHSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-165774199355Auxin response factor 1
4ldw_A1e-165774199355Auxin response factor 1
4ldw_B1e-165774199355Auxin response factor 1
4ldx_A1e-165774199355Auxin response factor 1
4ldx_B1e-165774199355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024554m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0821760.0AF082176.1 Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005489.10.0auxin response factor 9 isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLV4MHZ30.0V4MHZ3_EUTSA; Auxin response factor
STRINGXP_006413489.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9