PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024526m
Common NameEUTSA_v10024526mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 729aa    MW: 81302.7 Da    PI: 8.4792
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024526mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-17331430198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e++ l+++d+ g++W++++++  +++s+ yvl+ G     ++ +L++gD+v+F++++  e+
  Thhalv10024526m 331 FEKMLSASDTGRVGRLVLPKKYAEAFlpRLSNTEGVPLKVQDSMGKVWTFQFRFwpSNNSRIYVLE-GVTPCIQSMQLQAGDTVIFSRVD-PER 422
                      89**************************88889999*****************9455555559999.********************776.666 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +l +++++
  Thhalv10024526m 423 KLIMGFRK 430
                      66666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-27329441IPR015300DNA-binding pseudobarrel domain
CDDcd100174.84E-21329430No hitNo description
SuperFamilySSF1019361.31E-19329430IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-14331430IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561331432IPR003340B3 DNA binding domain
SMARTSM010191.9E-18331432IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MSSSSSLSSR FCFNRECSEF KLEHYRPGWR LQTGDFADLC HRCASAYEQG KFCDIFHQRA  60
SGWRCCESCG KRIHCGCIVS ASAFMLLDVG GIECLACARK KVALGPNYLP QLPIFFQSPI  120
AEKFKDLSIN WNSSTGSNQI SCRPPSFLGQ SVLQFDLHNR GDSYEFSRPT SKDRATACSI  180
EKKWGMNDLM GKLMSEKSKS HTSDILNNQN AGPNCEVLPS SNVNVYRPLI SLKEGPCGTQ  240
LAYPVPLTTP IETNVHSRLN GRSLWHTPKS SSLNFLRNDL NGGADSLCSL THLDTPGKYQ  300
VVPRYWPKVS YKNQVPQNLS KESESVVIPL FEKMLSASDT GRVGRLVLPK KYAEAFLPRL  360
SNTEGVPLKV QDSMGKVWTF QFRFWPSNNS RIYVLEGVTP CIQSMQLQAG DTVIFSRVDP  420
ERKLIMGFRK ASVAQSADQE TDSTNNNRDS CTNGDGESID NHSPSRAKKS AYKAKETPGV  480
GFSSRKKKSS MMITRSKRQK VEKGDHTELK LTWEEAQGFI LPPPSLTPSI IKIEGFEFEE  540
YKDAPIIGKP TTGSTCSANK KLLAEQYDEE AMEETEGLMM SPKETTKHPR HRRGCTCIVC  600
IQSPSGTSPK HDNCCSCTVC DAVKRRRRSL LLGRKNKQIE KENKAQKELE SLNSDEELHQ  660
SANNSGTTSK SHEHDASPQK GQIDLNFQPE KEEESLHKTT KDKSLHHDDT SFKPSSSSSA  720
HSQIEKQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-503114343126B3 domain-containing transcription repressor VAL1
5yzz_C1e-503114343126B3 domain-containing transcription repressor VAL1
5z00_C1e-503114343126B3 domain-containing transcription repressor VAL1
5z00_G1e-503114343126B3 domain-containing transcription repressor VAL1
5z00_K1e-503114343126B3 domain-containing transcription repressor VAL1
5z00_M1e-503114343126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024526m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0322981e-59KF032298.1 Leavenworthia alabamica pop-variant Russellville self-incompatibility gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005764.10.0LOW QUALITY PROTEIN: B3 domain-containing transcription factor VAL3
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLV4MIN20.0V4MIN2_EUTSA; Uncharacterized protein
STRINGXP_006413764.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3