PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10024509m | ||||||||
Common Name | EUTSA_v10024509mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | TALE | ||||||||
Protein Properties | Length: 740aa MW: 81441.5 Da PI: 6.8679 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.5 | 2.6e-09 | 518 | 555 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Thhalv10024509m 518 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 555 664459******************************88 PP | |||||||
2 | BELL | 122.3 | 2e-39 | 376 | 447 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ Thhalv10024509m 376 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAALPYTALAQKAMSRHFRCLKDAVAAQL 447 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.4E-76 | 309 | 445 | IPR006563 | POX domain |
Pfam | PF07526 | 2.7E-49 | 314 | 444 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 496 | 559 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.93E-12 | 499 | 560 | No hit | No description |
SMART | SM00389 | 1.2E-9 | 499 | 563 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.26E-17 | 501 | 566 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.8E-29 | 502 | 565 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.7E-18 | 516 | 555 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 740 aa Download sequence Send to blast |
MGIAKTSPTC TILLKTLCDN SMSQDYHHHH PHQPHQGGIF SFSNGFDRSD SPNLTQQKQE 60 HQRVEMDEES SVAGSGIPVY ETAGMLSEMF NFPGSSGGGG GDLDHGQSFR SNRQLLEQQH 120 QNIPAMNATD SAAAMQLFLM NPPPPQQPPS PASTTTTRSH HSSSTLHMLL PNPSHHHQGY 180 ANTMSMHQLP HQHHHQQHLT WQSSSSSSDH HHHHHHHHNS QREIGTVHVE NSGGQGLSLS 240 LSSSLEAAAK AEEYRRNIYY GSNSSKASSH HHQYNQFKTL LADSSQHHQV LNQFRSSPAA 300 AAATSTSSTG AVNILRNSRY TMAAQELLEE FCSVGRGFSK KSKLRNSSNP NTSGGAGGSP 360 SSAGAIKDHS PLSASDRIEH QRRKVKLLTM LEEVDRRYNH YCEQMQMVVN SFDIVMGHGA 420 ALPYTALAQK AMSRHFRCLK DAVAAQLKQS CELLGDKDAA GISSSGLTKG ETPRLRLLEQ 480 SLRQQRAFHQ MGMMEQEAWR PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL 540 SRNQVSNWFI NARVRLWKPM VEEMYQQESK EREREEEELE ENEEDQETKN SNNDKSTKSN 600 NNESNFSAVR TTSQTPMTTA QSEATAPDAD ADAAIATGHR LRSSDINAYE NDPSSLLLPS 660 SSYSDAAAVS SYGGSASFSA VATCQQGVGG FDDTDIDGVN VIRFGTNPTG DVSLTLGLRH 720 AGNMPDKDPS FCVRDFGGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-16 | 505 | 563 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-16 | 505 | 563 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-16 | 505 | 562 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 505 | 562 | 1 | 58 | Homeobox protein Meis1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10024509m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF173816 | 0.0 | AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411954.1 | 0.0 | BEL1-like homeodomain protein 2 | ||||
Refseq | XP_024005715.1 | 0.0 | BEL1-like homeodomain protein 2 | ||||
Swissprot | Q9SW80 | 0.0 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | V4MDV4 | 0.0 | V4MDV4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411954.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 0.0 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10024509m |
Entrez Gene | 18030653 |
Publications ? help Back to Top | |||
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