PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024488m
Common NameEUTSA_v10024488mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 761aa    MW: 83689.4 Da    PI: 5.5431
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024488mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1963118156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t+ q++eLe++F+++++p+ ++r+eL+++l+L+  qVk+WFqN+R+++k
  Thhalv10024488m  63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQVKFWFQNKRTQMK 118
                      688999***********************************************998 PP
2START218.71.9e-682634821206
                      HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                      ela +a++elv++a+ ++p+Wv+s    e++n++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +     +a tl
  Thhalv10024488m 263 ELAVAAMEELVRMAQTGDPLWVSSDnsvEILNEEEYFRTFPRGIGpkpigLRSEASRESTVVIMNHINLVEILMDVN-QWSSVFCgivsRALTL 355
                      57899*******************9999**************999********************************.******99999***** PP

                      EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
            START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                      ev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++ +w++vdvS+ds ++ p    + R++++pSg+li++++ng+skvtwveh
  Thhalv10024488m 356 EVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDNTWAVVDVSLDSLRPSP----ITRSRRRPSGCLIQELQNGYSKVTWVEH 445
                      ************************************************************99....7*************************** PP

                      EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      +++++r++h ++++lv++gla+gak+wvatl+rqce+
  Thhalv10024488m 446 TEVDDRSVHTMYKPLVNTGLAFGAKRWVATLDRQCER 482
                      ***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-2244118IPR009057Homeodomain-like
SuperFamilySSF466891.59E-1852120IPR009057Homeodomain-like
PROSITE profilePS5007117.00660120IPR001356Homeobox domain
SMARTSM003891.5E-1761124IPR001356Homeobox domain
PfamPF000467.5E-1763118IPR001356Homeobox domain
CDDcd000862.63E-1863121No hitNo description
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PROSITE profilePS5084845.921254485IPR002913START domain
SuperFamilySSF559611.51E-35255484No hitNo description
CDDcd088751.93E-125258481No hitNo description
SMARTSM002343.7E-80263482IPR002913START domain
PfamPF018521.7E-57264482IPR002913START domain
Gene3DG3DSA:3.30.530.201.8E-6362481IPR023393START-like domain
SuperFamilySSF559612.9E-23502681No hitNo description
SuperFamilySSF559612.9E-23713752No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MYHPNMFEPQ HHMFDMTPKI SDNDLGLTGS REDDFETKSG AEVTMENPLE EELQDPNQRP  60
NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELS LEPLQVKFWF QNKRTQMKAQ  120
HERHENAILK SDNDKLRAEN NRYKDALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE  180
EIDRISSIAA KYVGKPLLTN STPFPQLTSS QHIPTRSLDL EVGNFGNSNN NQMGFVGEMY  240
GTTSDILRSV SIHSDADKPM IVELAVAAME ELVRMAQTGD PLWVSSDNSV EILNEEEYFR  300
TFPRGIGPKP IGLRSEASRE STVVIMNHIN LVEILMDVNQ WSSVFCGIVS RALTLEVLST  360
GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD NTWAVVDVSL DSLRPSPITR  420
SRRRPSGCLI QELQNGYSKV TWVEHTEVDD RSVHTMYKPL VNTGLAFGAK RWVATLDRQC  480
ERLASSMASN IPAADLSVIT SPEGRKSMLK LAERMVMSFC SGVGASTAHV WTTLTTTGSD  540
DVRVMTRKSM DDPGRPPGIV LSAATSFWLP VSPKRVFDFL RDENSRSEWD ILSNGGLVQE  600
MAHIANGRDP GNCVSLLRVN SVNSGQSNML ILQESCTDAS GSYVIYAPVD TMAMNVVLSG  660
GDPDYFALLP SGFAILPDGS VREGGNASVG AEGGGGGEGS NLDLVTSTAS NCGSLLTVAF  720
QILVDSVPTA KLSLGSVATV NSLIKCTVQR IKAALACDGA *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024488m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2299700.0AK229970.1 Arabidopsis thaliana mRNA for L1 specific homeobox gene ATML1/ovule-specific homeobox protein A20, complete cds, clone: RAFL22-43-B20.
GenBankAY0911040.0AY091104.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds.
GenBankAY1504910.0AY150491.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413738.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_024005362.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_024005363.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLV4P6K70.0V4P6K7_EUTSA; Uncharacterized protein
STRINGXP_006413738.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]