PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024320m
Common NameEUTSA_v10024320mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 973aa    MW: 107839 Da    PI: 5.1654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024320mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-13545748
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + de l +av+++ g++Wk+Ia++++  Rt+ qc +rwqk+l
  Thhalv10024320m  5 DQDEVLCKAVERFQGKNWKKIAECFP-DRTDVQCLHRWQKVL 45
                     5799**********************.************986 PP
2Myb_DNA-binding59.66.8e-195197148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  ++ +v+++G++ W+tI+++++ gR +kqc++rw+++l
  Thhalv10024320m 51 KGPWSKEEDATIIALVEKYGPKKWSTISQHLP-GRIGKQCRERWHNHL 97
                     79******************************.*************97 PP
3Myb_DNA-binding48.52e-15103145145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE+++l++ ++ +G++ W+  ++ ++ gR+++++k++w+
  Thhalv10024320m 103 KNAWTQEEELILIREHQIYGNK-WAELMKFLP-GRSDNSIKNHWN 145
                      689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.751145IPR017930Myb domain
SMARTSM007171.8E-5547IPR001005SANT/Myb domain
CDDcd001671.33E-9545No hitNo description
Gene3DG3DSA:1.10.10.601.9E-17557IPR009057Homeodomain-like
SuperFamilySSF466891.72E-11555IPR009057Homeodomain-like
PfamPF002496.1E-10645IPR001005SANT/Myb domain
PROSITE profilePS5129432.48846101IPR017930Myb domain
SuperFamilySSF466891.01E-3048144IPR009057Homeodomain-like
SMARTSM007173.8E-185099IPR001005SANT/Myb domain
PfamPF002491.5E-175197IPR001005SANT/Myb domain
CDDcd001677.29E-165397No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2758104IPR009057Homeodomain-like
SMARTSM007175.4E-14102150IPR001005SANT/Myb domain
PROSITE profilePS5129417.877102152IPR017930Myb domain
PfamPF002493.1E-13103146IPR001005SANT/Myb domain
CDDcd001671.08E-10105145No hitNo description
Gene3DG3DSA:1.10.10.601.3E-20105152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
MFFLDQDEVL CKAVERFQGK NWKKIAECFP DRTDVQCLHR WQKVLNPELV KGPWSKEEDA  60
TIIALVEKYG PKKWSTISQH LPGRIGKQCR ERWHNHLNPG INKNAWTQEE ELILIREHQI  120
YGNKWAELMK FLPGRSDNSI KNHWNSSVKK KLESYYASGL LDQSQSSPLI ALQNKSIASS  180
SSWMHSSGDE GNFQPGADAE ESECSQASTV FSCSVSTNDL LDEVKPANQE FYIPELPSGI  240
EQQISNSASH AESYYPSFED AKIVVPEISC EAETSKKFQN HYCSHEVRTT TDTADQLQGV  300
SNDSKQDLNL DCPQLLTNNM DVDGKNEAPQ AFQSSVRLKD QPSLPNSDTD IHPQAQTLIT  360
DEECCRVLFP NTEKDSGIST GEQGHNMVDP QKGKGSLCSR SAETHVHETG NIPALSWHPS  420
NSEGLADHNC VRLLYSAVKD SRSLRNDSTD PIQGCHLLEA TALDCKTDTN DNFIDTDGRV  480
ISRGNDDNDG IQQQELAYIP KDSLKLVPLN SFSSPSRVNK GYFPIGDKPA EKDKGSLCYE  540
PPRFPSADIP FFSCDLAPSN SDLRQEYSPF GIRQLMISSM NCTTPLRLWD SPCQDKSPDV  600
MLKDAAKCFS GAPSILKKRH QDLLSPVLDR RKDKRLKRAE ASSLAKDFSR LDVMLDDGGD  660
CKSSRLLKFP DNENRCSSPS EAKYNKDASG WSYQEMIPIG EDPKETLESG RVTSMKNEKG  720
CSDDGGASDK IDQDTCRSLA DHNDAEMQLS SPDKTGSRPD NKVNTSAKNP SNQQKKSLGT  780
TIPNGEILSE PPCTADSIPL SAIAGNKTNT AESSFDIENF SIFDGTPFKK LLDSPSPWKS  840
PLLFGSFLQS PKLPPEITFE DIGCFMSPGE RSYDAIGLMK HLSEHTATAY ADALEVLGND  900
TPESILKKRQ LNKSIQGKEN QHWPHDQLEN RSQVERRALD FSDCGTPGKA NVSSVSPGGY  960
SSPSSYLLKS CR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-65515212159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-65515212159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1628635DRRKDKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024320m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1516460.0AF151646.1 Arabidopsis thaliana PC-MYB1 (PC-MYB1) mRNA, complete cds.
GenBankAF1760050.0AF176005.2 Arabidopsis thaliana putative c-myb-like transcription factor (AtMYB3R-1) mRNA, complete cds.
GenBankAF1897840.0AF189784.1 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412436.20.0transcription factor MYB3R-1
SwissprotQ9S7G70.0MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLV4MBV40.0V4MBV4_EUTSA; Uncharacterized protein
STRINGXP_006412436.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]