PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024262m
Common NameEUTSA_v10024262mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HB-other
Protein Properties Length: 1122aa    MW: 126480 Da    PI: 7.7395
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024262mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.44.5e-12548852
                     -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
         Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52
                     ++ ql++Lee++  ++yp+ ee+eeL k lgLt + V+ WF+ rR
  Thhalv10024262m  5 SPAQLQALEEFYLGQMYPTPEEMEELGKTLGLTVKEVRGWFK-RR 48
                     789**************************************8.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.305148IPR001356Homeobox domain
SMARTSM003893.6E-7159IPR001356Homeobox domain
CDDcd000862.75E-11352No hitNo description
SuperFamilySSF466891.11E-9352IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-11353IPR009057Homeodomain-like
PfamPF000461.2E-9548IPR001356Homeobox domain
PROSITE profilePS5082712.747355414IPR018501DDT domain
SMARTSM005711.2E-10355414IPR018501DDT domain
PfamPF027911.3E-9356409IPR018501DDT domain
PfamPF156121.7E-7634674IPR028942WHIM1 domain
PfamPF156132.7E-11757830IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1122 aa     Download sequence    Send to blast
MKRKSPAQLQ ALEEFYLGQM YPTPEEMEEL GKTLGLTVKE VRGWFKRRSR LKGGKSLPND  60
GLGAKNPQSY NSSLTRSSTS SRCNFGEAAE KRCNVGTRKA SCQKLLTSQH ILAKIFRKDG  120
PSLGFEFDRL PSGARKASWL DSSSVDQQKQ RVAKKRKISE LLDHTSQDCV KKNATVMKHG  180
IGKGLMTVWR VMNRNSKDVS PCVDLFDDRA TLPQSSARNP PYQKINKRQL ASILKQKLLQ  240
KRSTERKKCS INREAELNNV DALMAFKEKC ELAVDGEETC QTISILVDDE ELEMRERQEG  300
ANPLTCSCHL PNSGSHGCFL CKGLVLLFPD LLPKFPPNSV QMRVPFGLHP WNSSPESVKK  360
LFKVVHFLYT YSATLDICPF TLDEFTRAFH DKDSLLLGKI HLSLLKLLLL DVGTELQRGS  420
FSNLSISCKF LALLQSVESQ ILILDLWKDS LNSLTWTEIL RQILVAAGFG FAKCAIQSEE  480
LSKERRLMKK YGLRLGTLKG ELFRMLNEQG NNGLKISELA NAAEVAALNL ATASEERERS  540
ISSTLASDIT LFEKISDSTY RVRVNCFSED PDKSQSDSDE SGSVDDKSDE CAFSSGDEIE  600
HVSENLAFRV KYSKRRKHKS KMVEVCSEID ESHPGEPWLL GLMEGEYSDL SIEEKLDVIV  660
ALIDLLSSGS TIRKEDLPRA MVDCPPSIYS HGSGGKIKRS SSNQYSHQRL SWVHGGELHG  720
TKELSKSSDS HPVDSSSNVG AFAKLAGDKR KNVHPMQSVY LGSDRRFNRY WLFLGPCNPN  780
DPGHRCVYFE SSEDGHWEVI SSREALRTLL SVLDDRGTRE ARLIESLEKR ESFLCQAMLS  840
SHVTQLETGH FTDIVREDSS SPVSDIDNNL CQNEIASDQF SSQHAAIVFE IGSKREKSLL  900
WSLLQEFDEW IWVNFYLNLN AVKHSRRSYL DSLTRCKSCH DLYWRDEKHC KICHATFELD  960
IDLEERYAIH AATCRKNEAS DTFPDHKVLS SQLQSLKAAV YAIESAMPED ALIGAWKKTA  1020
HRLWAKRLRR SSILSDITQV IGDFVGAINE DWLWHFSGEE NSSALMGEVI TSFPSLPQTT  1080
SAIALWLVKL DTLIAPCVEK SQPERNRWCM TRNTSRRAFK Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147156QKQRVAKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024262m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496400.0AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBankAL1615340.0AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005576.10.0homeobox-DDT domain protein RLT3 isoform X2
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLV4MLN10.0V4MLN1_EUTSA; Uncharacterized protein
STRINGXP_006415009.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96382125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator