PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023998m
Common NameEUTSA_v10023998mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 307aa    MW: 34917.1 Da    PI: 6.4473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023998mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.5e-14112163155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+r+N+ ++ Lr+l+P +   + ++ + a+i+  A+++I++L+
  Thhalv10023998m 112 QRMTHIAVERNRRKRMNEYLSVLRSLMPDS---YVQRCDQASIVGGAINFIRELE 163
                      79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.79111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15111170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.52E-12111167No hitNo description
Gene3DG3DSA:4.10.280.101.4E-13111166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-10117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MALEGLVFQH NYDGKEAYSN IYTDDEPPFY DLQASLSFFD DKTVNYDSTF LHEGNNGNAN  60
TFLHKSPPHE FDTDKEKTTP SHDMSSQQDM EMNQVTRRRT RVKKNKDDIN NQRMTHIAVE  120
RNRRKRMNEY LSVLRSLMPD SYVQRCDQAS IVGGAINFIR ELEHHLHLQN INAEPNGKPF  180
SGSNISSATP FSDTFKLPQF SMGSSSVGRN VANDLADIEV SLVESHASLK IRTRRRPKVL  240
PNIVSGLQSL GFIILHLNVS TVSDFVLFCF STKMEDYCKR TSVADIATSV YEMLMIHQEN  300
HDDVQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112123RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023998m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392485.10.0transcription factor bHLH96
SwissprotQ9C7T44e-60BH096_ARATH; Transcription factor bHLH96
TrEMBLV4MER70.0V4MER7_EUTSA; Uncharacterized protein
STRINGXP_006392485.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]