PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10023874m | ||||||||
Common Name | EUTSA_v10023874mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 104aa MW: 11831.8 Da PI: 9.9685 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.6 | 6.9e-18 | 12 | 44 | 4 | 36 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaeva 36 + rqvtfskRr g++KKA ELS+LC+aeva Thhalv10023874m 12 DHVNSRQVTFSKRRSGLFKKARELSTLCNAEVA 44 55568***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 8.24E-18 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-16 | 1 | 56 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.465 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-17 | 14 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MGCAKIVIKR LDHVNSRQVT FSKRRSGLFK KARELSTLCN AEVAAMTQTL LRYENYKNSS 60 DAPLINSKAE VFQNLLYMNL RVVCFTEFSS IKQYCYVPLI INS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10023874m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024012192.1 | 7e-24 | agamous-like MADS-box protein AGL15 isoform X1 | ||||
Swissprot | Q39295 | 2e-21 | AGL15_BRANA; Agamous-like MADS-box protein AGL15 | ||||
TrEMBL | V4MDG7 | 6e-70 | V4MDG7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392000.1 | 1e-70 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 3e-22 | AGAMOUS-like 15 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10023874m |
Entrez Gene | 18009577 |