PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10023678m | ||||||||
Common Name | EUTSA_v10023678mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 23370.2 Da PI: 5.3105 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.2e-16 | 60 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r ++ g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g Thhalv10023678m 60 PVYRGIR-CR-GGKWVSEIREPKK---TTRVWLGTYPTPEMAAAAYDVAALALKG 109 68****9.55.7*********854...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-10 | 60 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.836 | 61 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-27 | 61 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-28 | 61 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-18 | 61 | 119 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.33E-16 | 62 | 119 | No hit | No description |
PRINTS | PR00367 | 1.4E-6 | 62 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 99 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGDPKNPITE NSCPLATITT THTTTSTVSF AASSSTTSGN DNDTLMATTS GTISRRKKHP 60 VYRGIRCRGG KWVSEIREPK KTTRVWLGTY PTPEMAAAAY DVAALALKGG KAVLNFPDSV 120 GSYPFPVSSS AAHIRIAAAT AAATVGAAAA NAAVKGGEKK GEETVCDVAG SSAYMEFVDE 180 EELLNMPGLL ADMAKGMMVA PPWMGSPPSD DSPENSDGES LWSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-13 | 58 | 117 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10023678m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391788.1 | 1e-164 | ethylene-responsive transcription factor ERF026 | ||||
Swissprot | Q9CAN9 | 1e-86 | ERF26_ARATH; Ethylene-responsive transcription factor ERF026 | ||||
TrEMBL | V4KD88 | 1e-162 | V4KD88_EUTSA; Uncharacterized protein | ||||
STRING | XP_006391788.1 | 1e-163 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1957 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12630.1 | 2e-36 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10023678m |
Entrez Gene | 18010306 |