PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023591m
Common NameEUTSA_v10023591mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 326aa    MW: 36501.7 Da    PI: 8.4442
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023591mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.72.3e-53161421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++
  Thhalv10023591m  16 LPPGFRFHPTDEELVVHYLKKKASSIPLPV-SIIAEIDLYKFDPWELPSKTSFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFT 108
                      79****************************.89***************988899**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++vg+kk Lvfy g+ pkg ktdW+mheyrl
  Thhalv10023591m 109 CNSHKVGVKKALVFYGGKPPKGIKTDWIMHEYRL 142
                      ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-648178IPR003441NAC domain
PROSITE profilePS5100560.50316177IPR003441NAC domain
PfamPF023651.4E-2717142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MENMGDSSIG PGHPHLPPGF RFHPTDEELV VHYLKKKASS IPLPVSIIAE IDLYKFDPWE  60
LPSKTSFGEQ EWYFFSPRDR KYPNGVRPNR AATSGYWKAT GTDKPIFTCN SHKVGVKKAL  120
VFYGGKPPKG IKTDWIMHEY RLTDGNLSTT AKPPDSATTR KNSLRLDDWV LCRIYKKNSS  180
QRPTMERVLL REDLMEGMLS KSSANSSSTS VLDNNDNNNN NNNNEEHFFD GMVVSSDKRS  240
LCGQYRMGNE ASGSSSFGSF LSSKRFQHTS DLNNENYNVS FVSMLSEIPQ SSGFHGNGVI  300
DTTSSLADHG VLRQAFQLPN MNWHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-731618017168NO APICAL MERISTEM PROTEIN
1ut4_B5e-731618017168NO APICAL MERISTEM PROTEIN
1ut7_A5e-731618017168NO APICAL MERISTEM PROTEIN
1ut7_B5e-731618017168NO APICAL MERISTEM PROTEIN
3swm_A4e-731618020171NAC domain-containing protein 19
3swm_B4e-731618020171NAC domain-containing protein 19
3swm_C4e-731618020171NAC domain-containing protein 19
3swm_D4e-731618020171NAC domain-containing protein 19
3swp_A4e-731618020171NAC domain-containing protein 19
3swp_B4e-731618020171NAC domain-containing protein 19
3swp_C4e-731618020171NAC domain-containing protein 19
3swp_D4e-731618020171NAC domain-containing protein 19
4dul_A5e-731618017168NAC domain-containing protein 19
4dul_B5e-731618017168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023591m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0878390.0AY087839.1 Arabidopsis thaliana clone 38858 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392059.10.0NAC transcription factor 25
SwissprotQ8GY420.0NAC25_ARATH; NAC transcription factor 25
TrEMBLV4JVB80.0V4JVB8_EUTSA; Uncharacterized protein
STRINGXP_006392059.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.10.0NAC domain containing protein 25