PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023588m
Common NameEUTSA_v10023588mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 329aa    MW: 35960.5 Da    PI: 6.9665
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023588mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-19130180256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Thhalv10023588m 130 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 180
                      59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.36E-17129189No hitNo description
SuperFamilySSF541711.7E-22130187IPR016177DNA-binding domain
SMARTSM003801.1E-36130193IPR001471AP2/ERF domain
PROSITE profilePS5103223.301130187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-31130188IPR001471AP2/ERF domain
PRINTSPR003674.2E-10131142IPR001471AP2/ERF domain
PfamPF008473.3E-13131180IPR001471AP2/ERF domain
PRINTSPR003674.2E-10153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEESNDLFQT NFSPKISEIR ASLSQIILAG GPNTLDSIFS FLTPSSTTSL DTLNPPPPPS  60
PQLGSSVYLR QRDLIERLHL QNRAVSTPPL FSSSFDHQTS ELMLQEASAN PAAAFAAALA  120
AGRTAKKKKL YRGVRQRHWG KWVAEIRLPQ NRMRVWLGTY DTAEAAAYAY DRAAYKLRGE  180
YARLNFPNLK DPSELLGLGD SSKLIALKSA VDGKIQMICQ RVRRERAKKS GKRTATATDS  240
SHSSSPEILS SPAATVTATA VNSEDSYWNS PMGVWNSENS SPASVSISDE VPAMTTEEDT  300
MMGVDTDGFL LARMPSFDPE LIWEVLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19127187263ATERF1
3gcc_A2e-19127187263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023588m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0666890.0AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence.
GenBankAK2287630.0AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15.
GenBankAY5608760.0AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds.
GenBankBT0330820.0BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391624.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-155ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLV4JU680.0V4JU68_EUTSA; Uncharacterized protein
STRINGXP_006391624.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-122ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]