PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023549m
Common NameEUTSA_v10023549mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 360aa    MW: 38481.5 Da    PI: 8.1726
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023549mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.2e-3949110263
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                      k++al+cprC+s ntkfCyynnysl+qPryfCk CrryWt+GG+lrn+P+Ggg rknk+sss
  Thhalv10023549m  49 KDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTEGGSLRNIPIGGGIRKNKRSSS 110
                      7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-3141101IPR003851Zinc finger, Dof-type
PfamPF027012.6E-3350107IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.61253107IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105591IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDTAKWPQEF VVKPMNEIVT NTCLKQPNPP PSTATAAAPP VERKARPEKD QALNCPRCNS  60
LNTKFCYYNN YSLTQPRYFC KDCRRYWTEG GSLRNIPIGG GIRKNKRSSS SSSSSSSSSN  120
SNSSPSSSSS SKKALFVNNT TPPPPPLPHV NPKDAQATAT AAKVQDLAFS QNAHEVKDLN  180
LAFSQGFGIA HHHHHTIPEF LQVVPSSMKN NPLVSTSSAL ELLGISNSSR PAFMPFPSVH  240
DSSSVYAAAP GFGLSYPQFQ EFMRPPALGF SLDGGDSLHQ EEGSTRTNNG SRPLLTFESL  300
KLPVSLSSTN SGGNGNDHHH HSDHEHGKEE GDADQSVGFW NGMLSAGASA ASGGGGSWQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00210DAPTransfer from AT1G64620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023549m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391598.10.0dof zinc finger protein DOF1.8
SwissprotQ84JQ81e-158DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBLV4KCL50.0V4KCL5_EUTSA; Uncharacterized protein
STRINGXP_006391598.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149321720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.11e-130Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]