![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10023507m | ||||||||
Common Name | EUTSA_v10023507mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 395aa MW: 42143.1 Da PI: 6.7267 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 134.5 | 9.4e-42 | 49 | 222 | 3 | 136 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ Thhalv10023507m 49 TTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPpskavpl 142 579*****************************************************************99988888888888666667778888 PP TCP 89 ................................kaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136 + ++++ +++++q+ ++++ + + + + +r+r+r+++++ ++++ Thhalv10023507m 143 ygalglshhhhqyeeqggafgahtppllgfhhH-LQQHQhHQNQNQRLDQAQEETIQGTDGENFSRKRYRSEKENDDRKQN 222 8888888888899999*********99999852.44443366666666666677777777788888888666655555433 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-43 | 53 | 221 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.411 | 54 | 108 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 395 aa Download sequence Send to blast |
MDLSDGAAAR GGNSRQLVDP SLSIVPRSTS LEDDTLATTS SPAVTTTVTT KRSTKDRHTK 60 VDGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIVAATG TGTIPANFSS 120 LSVSLRSSGS TLSAPPSKAV PLYGALGLSH HHHQYEEQGG AFGAHTPPLL GFHHHLQQHQ 180 HHQNQNQRLD QAQEETIQGT DGENFSRKRY RSEKENDDRK QNENKSLKES ESPASAAAAA 240 PMWAVAPTSR ATGGNTFWML PVPTTAGNQP AAMESSSNTN RAHMWPFVNS AGAVAGAGAA 300 THFMAGTGFS FPMDQYRGSP LQLGSFLAQP QQAMPDSNLG MLAALNAAYP RGGNANANPN 360 AEQVNNAVEH QEKQQQPQQS DPDDDSRDGN SNSD* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10023507m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392342.1 | 0.0 | transcription factor TCP8 | ||||
Swissprot | Q9C518 | 1e-171 | TCP8_ARATH; Transcription factor TCP8 | ||||
TrEMBL | V4KQK7 | 0.0 | V4KQK7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392342.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10218 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G58100.1 | 1e-120 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10023507m |
Entrez Gene | 18009810 |
Publications ? help Back to Top | |||
---|---|---|---|
|