PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10023356m | ||||||||
Common Name | EUTSA_v10023356mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bHLH | ||||||||
Protein Properties | Length: 616aa MW: 68745.3 Da PI: 4.7492 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.5 | 1.4e-14 | 425 | 471 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h Er+RR+++N++f +Lr+++P+ + K +K++iL ++eY+++Lq Thhalv10023356m 425 NHAFSERKRREKLNDRFMTLRSIIPSiS------KIDKVSILDDTIEYLQELQ 471 78889*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.1E-54 | 25 | 214 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.749 | 421 | 470 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-19 | 423 | 491 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-12 | 425 | 471 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-18 | 425 | 489 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.81E-16 | 425 | 475 | No hit | No description |
SMART | SM00353 | 1.3E-16 | 427 | 476 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MLTWGCYIDE ETMAAGENRT VPENLKKQLA VSVRNIQWSY GIFWSVSASQ PGVLEWGDGY 60 YNGDIKTRKT IQAAEVKADK LGLERSEQLR ELYESLSVAE SSASGGSQVT RRASAAALSP 120 EDLTDTEWYY LVCMSFVFNI GEGIPGGALS NGEPIWLCNA HTADNKVFTR SLLAKSASLQ 180 TVVCFPFLGG VLEIGTTEHI TEDLNVIQCV KTLFLEAPPF ATISTRSDFQ EIFDPLCDDK 240 YIPVFGNETF PTTSTSGFEQ EPEDHDSFIN GGGASQVQSW QFVGEELSNC VHQSLNSSDC 300 VSQTFVGTTR RVACDPRKSK VQRLGQIQEQ SNHVNMDDDV HYQSVISTIF KTTHQLILGP 360 QFQNFDKRSS FTRWKRSSSA ETLGEKSQKM LKKIIFEVPL MNQKALLLPD TPEDSEFKVG 420 DETANHAFSE RKRREKLNDR FMTLRSIIPS ISKIDKVSIL DDTIEYLQEL QRRVQELESC 480 RESTNTEIRI AMKRKKPEDE DERASANCMN SKRKESDVNV GEDEPADTGY AGLTDNLRIG 540 SFGNEVVIEL RCAWREGILL EIMDVISDLN LDSHSVQSST GDGLLCLTVN CKHKGTKIAT 600 TGMIQEALQR VAWIC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-16 | 38 | 214 | 24 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-16 | 38 | 214 | 24 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-16 | 38 | 214 | 24 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-16 | 38 | 214 | 24 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 429 | 434 | ERKRRE |
2 | 430 | 435 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation but promotes trichome formation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Involved in seed mucilage production. Activates the transcription of GL2. {ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10023356m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. Negatively regulated by MYB66/WER, GL3 and BHLH2 in the developing non-hair cells, and positively regulated by CPC and TRY in the developing hair cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15590742}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353217 | 0.0 | AK353217.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-32-J06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391734.1 | 0.0 | transcription factor EGL1 | ||||
Swissprot | Q9CAD0 | 0.0 | EGL1_ARATH; Transcription factor EGL1 | ||||
TrEMBL | E4MXH0 | 0.0 | E4MXH0_EUTHA; mRNA, clone: RTFL01-32-J06 | ||||
TrEMBL | V4JUJ6 | 0.0 | V4JUJ6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006391734.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2592 | 28 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10023356m |
Entrez Gene | 18009777 |