PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023187m
Common NameEUTSA_v10023187mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 94aa    MW: 10777.1 Da    PI: 9.8202
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023187mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-102670345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+  d+++  a +++ ++   +W  +ar +g g++++++k ++ 
  Thhalv10023187m 26 SWTAKQDKQFEMALAKYDKDtpdRWQNVARAVG-GKSAEEVKRHYE 70
                     7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.3392277IPR017884SANT domain
SMARTSM007176.0E-102375IPR001005SANT/Myb domain
SuperFamilySSF466892.69E-132581IPR009057Homeodomain-like
PfamPF002492.5E-82670IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-52679IPR009057Homeodomain-like
CDDcd001672.20E-72773No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MLKELHIFIL IMASNSISTS RSSSSSWTAK QDKQFEMALA KYDKDTPDRW QNVARAVGGK  60
SAEEVKRHYE LLIRDVNDIE SGRYPQPRYR NTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-291793177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023187m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016149.12e-55protein RADIALIS-like 4
SwissprotQ1G3C41e-39RADL4_ARATH; Protein RADIALIS-like 4
TrEMBLV4M3573e-63V4M357_EUTSA; Uncharacterized protein
STRINGXP_006409166.14e-64(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.13e-41RAD-like 4