PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023020m
Common NameEUTSA_v10023020mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 286aa    MW: 31370 Da    PI: 8.6731
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023020mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016146168123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k+F ++  L  H  tH
  Thhalv10023020m 146 FECGVCKKVFGSHQALGGHRATH 168
                      89**************9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.116688IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-76690IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7436693IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-86788No hitNo description
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-8141168No hitNo description
PfamPF139122.7E-8145169IPR007087Zinc finger, C2H2
SMARTSM003550.17146168IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66146173IPR007087Zinc finger, C2H2
PROSITE patternPS000280148170IPR007087Zinc finger, C2H2
SMARTSM003555.1219241IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-10223243IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTNTSDSDPN FNIPFAPSNV ILPSYNQNPR RKRTKLSNNE TGSSSSSSSR PKPVKKPDPN  60
APKITRPCTE CGRQFWSMKA LFGHMRCHPE RQWRGINPPP NHQRTATSSS SLASVASEED  120
HNIASTLLML ANGSMTGSSG AVEARFECGV CKKVFGSHQA LGGHRATHKH VKGCFAITNL  180
TEEDPVPLSP PPHHHHHQET VDQDHKSKSH VKFVSGINHR YNICSRVFSS GQALGGHMRC  240
HWEKDQEEKN QDSTVIDLNV PPAMNLPSSS SDTLSECSLD LRLGL*
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023020m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409340.10.0zinc finger protein ZAT2
SwissprotQ9SIJ01e-123ZAT2_ARATH; Zinc finger protein ZAT2
TrEMBLV4ME420.0V4ME42_EUTSA; Uncharacterized protein
STRINGXP_006409340.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-115C2H2-like zinc finger protein